NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014132

3300014132: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_132



Overview

Basic Information
IMG/M Taxon OID3300014132 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0121296 | Gp0151538 | Ga0134366
Sample NameHuman oral microbial communities of schizophrenia patients from Maryland, USA - ES_132
Sequencing StatusPermanent Draft
Sequencing CenterThe George Washington University (GWU)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size23442404
Sequencing Scaffolds1
Novel Protein Genes1
Associated Families1

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationUSA: Maryland
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054110Metagenome140N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134366_100006All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis36846Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134366_100006Ga0134366_10000624F054110VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPQKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVRTYKGGD*

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