NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014292

3300014292: Human oral microbial communities of schizophrenia patients from Maryland, USA - ES_209



Overview

Basic Information
IMG/M Taxon OID3300014292 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121296 | Gp0151523 | Ga0134351
Sample NameHuman oral microbial communities of schizophrenia patients from Maryland, USA - ES_209
Sequencing StatusPermanent Draft
Sequencing CenterThe George Washington University (GWU)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size101561720
Sequencing Scaffolds5
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Throat → Human Oral → Human Oral Microbial Communities Of Schizophrenia Patients From Maryland, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal secretion

Location Information
LocationUSA: Maryland
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072446Metagenome121N
F076191Metagenome118N
F078842Metagenome116N
F080164Metagenome115N
F089055Metagenome109Y
F103430Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134351_1000675Not Available10458Open in IMG/M
Ga0134351_1002254All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes4804Open in IMG/M
Ga0134351_1008184Not Available2060Open in IMG/M
Ga0134351_1018755Not Available1111Open in IMG/M
Ga0134351_1043838All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria560Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134351_1000675Ga0134351_100067511F076191MKIIAENPAEEALLWRIKVLSDELVNQDNRSTSMPMWTILDNNKAGKDYGAVMYFTGKAAEQHIEENGHHYDNPTICVRSAHDNRELKDIVHLLILAGGNEIPSNHYGVLRDA*
Ga0134351_1000675Ga0134351_10006757F103430MEQITIKAFIGSNNKTKKLEVDKIISTVNTNHEAFTLQYPVIGCWRGETEQTAILYLSDEHSKVMNTLNKLKEVLDQEAIAYQIENKINLI*
Ga0134351_1002254Ga0134351_10022541F078842MIISSIYKTVDNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSSEAKKTYDEALRKFDKLVIPEDEILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSCDFLEYIKILSSSVFCDNLRKALVRCSDNHKQVILDRSTLNAILGGCVIGGKGWLEMADSARIRQMINSIELDVYEVKS*
Ga0134351_1008184Ga0134351_10081841F072446MRKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVEHHYHSIPGIVPERTTYRVPVIPRSVEDKTKKEYNDMELGKEAHLVFRATVHGDTINRHKKELKALSLQLNRLTLTSIGTSPVLCGVKSIEAVGIAENGNTYDLSAEMKLRIRDYSDKWKYRSSGIITIDCENTESKTAKYVVPLGRIREEELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGKVLSFQHKLPSKSVLQELPSKSVQQYYTPNGYERESTYFTALWPVHD
Ga0134351_1018755Ga0134351_10187551F080164MVGLAPCAAQQVTLRERALAFPLITEKDATEVDAPYAWRLPVVPLSLDNREIRNFAKYPLLPSLSGGKLTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGFGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEHVTLHLPGFEKAEKPLHYKEQTGRLVLCEYYESHRGDLFLDVANAHPEIFGELSPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS*
Ga0134351_1043838Ga0134351_10438382F089055SSQHKRTFWHLKVEKMNSTPECVTKTPEIEAREKLAAIFSDTEQRDNSKVNPELGKTAIDIENTSRMNSADNGAVDFCNQALGSYEKSLYHINNGPLETVQTIGISLQRLREYKTEGSCR
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