NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014686

3300014686: Well water microbial communities from Bangladesh - BaraHaldiaGW0309



Overview

Basic Information
IMG/M Taxon OID3300014686 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121290 | Gp0151483 | Ga0134311
Sample NameWell water microbial communities from Bangladesh - BaraHaldiaGW0309
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Tennessee
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size27356794
Sequencing Scaffolds4
Novel Protein Genes4
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium B3_Chlor1
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSurface And Well Water Microbial Communities From Bara Haldia, Bangladesh
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Well Water → Surface And Well Water Microbial Communities From Bara Haldia, Bangladesh

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater biome → well → groundwater
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationBangladesh: Bara Haldia, Matlab upazilla
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)10 to 30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013484Metagenome / Metatranscriptome271Y
F053659Metagenome / Metatranscriptome141Y
F060598Metagenome / Metatranscriptome132Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134311_100005All Organisms → cellular organisms → Bacteria80861Open in IMG/M
Ga0134311_100515All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium B3_Chlor3065Open in IMG/M
Ga0134311_100867Not Available2024Open in IMG/M
Ga0134311_107431All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi602Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134311_100005Ga0134311_10000526F013484VDFQFELAHRTLSTEQQAVLDAVNHLIAVLPDQPDSDVALRLGLMLLEVAKVAPQAELAAAAGFSQERSVRVYKERLKAQGLAGLFDRPIPGRPAVTTQTPVEKAFIQVVLAAVIEEHALPDDTTLAERVHQALRESQAADAGQVTASMIETLRLRWGIQRVPLQQALDTASTQATVPQTVQLGRTQVGGAFALAILLVEMGWLKLAKGLPIASGYAVTATHWLLTALFSVVFGIQRAFHLDAVCDLGFALVTGRARPLSHGTFQHILRGFPEQAVQQFYARSAKREVARLGEDPRRISIDGHNLPRYTQVVDLAKGKIGNTGRILKAEELVWAFDLDAHLWLAMRAYQGANKLSQALVEIVCEILKHRGPKPHPLRLFFDKGGSCGHVFRDLLQLSSVLFYTFAKRSEENVAAWERLPDRAFEPIPFTFDKHAGLPTDQRPAYRLADTEMTIHVWEDARVVETVTLRAMVLHDPQGQKPAERWPVTLLTNDRTRDARALLNEQGDHWGQEFAHRIGRHDLQSDILPPGYVLKTTRDAHGELQREVEFDNTAFFLSAWLHCLVFNLMTLFAQAMGGHYTKLWAGTLLRKFIRRPATLYLIGKELHVVFDPFPGQEDLQPLLDKLNAKRIGLPWLNNLIVQLSIAPDAAIYPLTEPEKRNRLFGDG*
Ga0134311_100515Ga0134311_1005152F013484VKVQLDFSDCTLSTEHQAVVSAVNQFLVWLPDDEDPEVALRLAMTILEAANVAPQDVLARAVGFSQSRSVRVYKQRLREEGLAGLFDHPIPGRPAVTTRTPVEKALFQVILSAVIEEHALPDDATLAERMNQVLREAQAPEAGQVTASMVETLRLRWDIQRVPLTRQLQAAPPPMPAEPERVRPGRTQVGGAFVLAVLLVEAGWLKFAHLLPMVPKYAVTATQWLLTAIFAVIFGVRRAFHLDDVCDPGFALVTGRPRPLSHGTFQHLLWAIPGSAAAQFYQATARQIIQSLGAGVRRLSLDGHNLARYTHLVDLVKGKIGNTGRILKAEELVLAYDLDAHLWLALRVYQGTKKLSQGIVPIVQEVLEHRGDLKGLLRLFFDKGGYHGQIFRALSECPDVHFYTPAVRYPDNVAQWEQLTDAQFDPEPFVFDKHADLPQAERPTYRLADTEMTLNVRQKQKVVGQVTLRAIVLHNPQGQKPAERWPVVFLTDDRQIDARALLNEYGDHWGQEFGHRIGRHDLYLDILPPGYVLRTYRDETGQLQREVEYDQTAFFLSAWLRCLVFNLMRRFAVELGGDYAKLWAGTLLRKFIRRPATLYLVGKELHVVFDPFPGQDALRPLLDKLNTKRTAIPWLNNLVVQFSIAQDEPLYPLAGPEKRNRLFGDG*
Ga0134311_100867Ga0134311_1008671F060598LLTAIFSVVFGIQRAFHLDEVCDLGFALATGRPRSLSHSTFQHILRAIPEQAAQTFYKRSAKGEVKRLEPGPRRISVDGHNLPRYTALVDLEKGKIGNTGRILKAEELVWAYDLDAHLWLAMRAFHGTNKLSQSLVEIVREVLKYRGPNQDQLRLFFDKGGSCGHVFRDLLPLPAVRFYTFAKRTEENVAEWEQLPAKAFEQKRFSFDKHADLPADQRPCYRLADTAMTLKVWDAAQHQIVDTVTLRAIVLHDAQAQKLAERWPVTLLTNDRTRDARVLLNEQGDHWGQEFAHRIGRHDLQSDILPTGYVLTTTRDEHGELQREVEFDNPAFFLSAWLHCLVFNLMTRFAQALGGESVHLWAGTLLRKFIRRPATLYLIEKELHVVFDPFPGQDELQPLLDKLNAKQVALPWLNHLVVQLSIAQDAPVYPLTEPEKRNRLFGDG*
Ga0134311_107431Ga0134311_1074311F053659MIGYPSNLPKESAPMSITETSQNSKRQDRTIVLHLGNTLAEYRANLMKPDGIPTLIRRVEIADSLNWGCLSDGHHPGCLRQLHFTHHHTYTRMVKHFDGTWSSVSILRVRCLDCEAVFTILPSFRVRYKRHDTDAIEKFMTLLFITEDSYRMAGVSQALGMD
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