NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014781

3300014781: Human fecal microbial communities from obese patients in Germany - AS62_24



Overview

Basic Information
IMG/M Taxon OID3300014781 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121297 | Gp0151598 | Ga0134426
Sample NameHuman fecal microbial communities from obese patients in Germany - AS62_24
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Hohenheim
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size122576755
Sequencing Scaffolds5
Novel Protein Genes7
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Obese Patients In Germany
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationGermany
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F052660Metagenome142N
F074964Metagenome119N
F090484Metagenome108N
F090515Metagenome108N
F099406Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134426_100026Not Available157344Open in IMG/M
Ga0134426_100229All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii46126Open in IMG/M
Ga0134426_100320All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales37586Open in IMG/M
Ga0134426_100387All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii32496Open in IMG/M
Ga0134426_119104All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis969Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134426_100026Ga0134426_100026102F074964MITKKNVNKLQNAVIKENAANLVGAVKLYNALFANGADLKAICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDNKVDKEKGVEAKTADWCAENVVYGSEYKSFGFTTAESLETKKSTKWLIKENDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ*
Ga0134426_100026Ga0134426_10002656F099406MSEVGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSDMTWGDHITKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDNVASTETKNVYNEYILVTEESGGKVLESLGMVSTGVDSNYLDLSMFSGNSGILDEASFGKVLDAYNNKITLGKLDGDYYYLNYFLEGNDFENNFKLKIVFASFSNADSAVGASEYDIQIQVGTFVVIQDKTYEAMNNMVQLSNTILSYLNFMAMPPKVVTTLANLPKYAHNIIANVASATNLSMTVSSEYVGREWQVRVNNTTGTDITQPLPTSGQFQSMSGDSVVVPKNSFIELSIWYINDKLVIRVGEQA*
Ga0134426_100026Ga0134426_10002678F090484MIKISRRDSRIRFKNKKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVKNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVSVAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKSYNNTAPDKKSGFNEVRDMYAEFAGEMAKAVGSVSEDIYMYVKAEQFKEKIENMDISIQSLPNYNTTVGNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL*
Ga0134426_100229Ga0134426_10022921F026489LFVPRSAGAEAVAEGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKGWAATPEKTEDSRLFGVKIF*
Ga0134426_100320Ga0134426_10032043F052660MCILRVLPENTPEKIGQERAGTEWTVVKSKISLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNS*
Ga0134426_100387Ga0134426_10038721F026489MRSAGKVLLAEGCSLLVAKENQKTTSDFDALEPRKRGYSPLLTPKGWATPEKTEDSRLFGVKIF*
Ga0134426_119104Ga0134426_1191042F090515TAPGRVACLEFAGGEKRKTNIAADYAVKALAFTALLCRHIGSIRTFLKS*
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