NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300014782

3300014782: Human fecal microbial communities from obese patients in Germany - AS68_0



Overview

Basic Information
IMG/M Taxon OID3300014782 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121297 | Gp0151561 | Ga0134389
Sample NameHuman fecal microbial communities from obese patients in Germany - AS68_0
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Hohenheim
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size119994586
Sequencing Scaffolds4
Novel Protein Genes4
Associated Families4

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Obese Patients In Germany
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationGermany
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047125Metagenome / Metatranscriptome150N
F052660Metagenome142N
F076064Metagenome118N
F076189Metagenome118N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134389_1001562All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes → Alistipes onderdonkii8052Open in IMG/M
Ga0134389_1004405All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium3054Open in IMG/M
Ga0134389_1005044All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium2721Open in IMG/M
Ga0134389_1016699All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1073Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134389_1001562Ga0134389_10015624F076064LKKTTPGRALENLFYLQYDLPPEASFHATTEETKRPDELYLRKLLPELTRLKLQPRHVVANDEAYYAAMKGVMLFTPEAEKLMLTEDYFSARRQIRLCAPDLKRLNETRRHPMPVLKLY*
Ga0134389_1004405Ga0134389_10044052F047125MDVVLLLMVLGVMLSGFWAADALDHIRREILQQEGKRRGWWS*
Ga0134389_1005044Ga0134389_10050442F076189VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSVHFDLHAIQSAQKQLRMLCNFHENTFGLLIFYTNYAIL*
Ga0134389_1016699Ga0134389_10166992F052660MCILHVLPENTPERIGQERAGTEWTVVKSKIRLCIRNRSYGRFFYGGILMGIALPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNS*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.