NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014783

3300014783: Human fecal microbial communities from obese patients in Germany - AS43_12



Overview

Basic Information
IMG/M Taxon OID3300014783 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121297 | Gp0151562 | Ga0134390
Sample NameHuman fecal microbial communities from obese patients in Germany - AS43_12
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Hohenheim
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size131576614
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1581
Not Available1
All Organisms → cellular organisms → Bacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Obese Patients In Germany
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationGermany
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F052660Metagenome142N
F067845Metagenome125N
F068855Metagenome124N
F074899Metagenome / Metatranscriptome119N
F084124Metagenome112Y
F090513Metagenome108N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134390_100137All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii89461Open in IMG/M
Ga0134390_101019All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii17419Open in IMG/M
Ga0134390_101152All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM15815244Open in IMG/M
Ga0134390_103167All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii4882Open in IMG/M
Ga0134390_107104Not Available2128Open in IMG/M
Ga0134390_113358All Organisms → cellular organisms → Bacteria1207Open in IMG/M
Ga0134390_125155All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii701Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134390_100137Ga0134390_10013753F084124LNATAKVFARATKGNKHHFHSQRNALTMFLAFLFIMAVACFNKLSFSTQTAWLFAPDKLLYRKIFMGAAQTRNF*
Ga0134390_101019Ga0134390_1010192F052660MCILHVLPENTPEKIGQERAGTERTVVKSKIRLCIRNRSYGRFLYGGILMGIALPIPSHRAKSHDFAHWWPAAAGHSRSADALPGKSNA*
Ga0134390_101152Ga0134390_1011521F068855VEAQGPQVRKSLALQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW*
Ga0134390_103167Ga0134390_1031675F026489LVAKENQKTTSDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF*
Ga0134390_107104Ga0134390_1071041F090513MAKYVRKIEWKLLHIKHILYMRPFGALKIVPQSVGNKNGTKAVLQGLAAAFVPYMLSFTYGNTA*
Ga0134390_113358Ga0134390_1133582F074899MSGRKQWNKQAATSSFLDKKTPQSLIQQELEGSAVVGKDEVTSSNLVSSSNINRLNRKI*
Ga0134390_125155Ga0134390_1251551F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNDFLYWSGCYGVPDDVTVALLLDDSAAMTAQLYAPQADSAAAKLLEDAAGHSELGAAFIDYNGTAYVVAVFR*
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