NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014789

3300014789: Human fecal microbial communities from obese patients in Germany - AS50_18



Overview

Basic Information
IMG/M Taxon OID3300014789 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121297 | Gp0151578 | Ga0134406
Sample NameHuman fecal microbial communities from obese patients in Germany - AS50_18
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Hohenheim
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size117865759
Sequencing Scaffolds5
Novel Protein Genes5
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Communities From Obese Patients In Germany
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Obese Patients In Germany

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationGermany
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F032286Metagenome / Metatranscriptome180Y
F047125Metagenome / Metatranscriptome150N
F056682Metagenome137Y
F087335Metagenome110N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134406_1000112All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii96209Open in IMG/M
Ga0134406_1000432All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales31302Open in IMG/M
Ga0134406_1001174All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales8493Open in IMG/M
Ga0134406_1001267All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii7729Open in IMG/M
Ga0134406_1001373All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii6934Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134406_1000112Ga0134406_100011282F087335MIELYFNDANLLPENREEEQYAEAALNSILAGKTADVEMCIQPCFYNAPLHKGLLYNLDDGTTLRIRPILNEAGEPELLIRCVTEESVETVYQRGANYD*
Ga0134406_1000432Ga0134406_100043224F032286MVKWVCQIVIPVRRRALVFDVRFFAGNAADDTLVTGGTLSFCRLMRLCVKRRNVILNGKRRSLPDSALFHADNRTEQKTISPFSLALIFTFDFAALSERRSCPEDRSRRFVPVGTLALSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIDLSRISKRSENAPKNADFHAYGQDRKRTEN*
Ga0134406_1001174Ga0134406_10011744F056682MKMQSRAGKVANQSIRQGEIYSASFGAFPSKNRSTFPIQELRKNREDQEVL*
Ga0134406_1001267Ga0134406_10012677F026489PREEVLLAEGCSLLTPKENQKSASDFDALEPRKRGCSPLLTPKRRATPEKTEDSRLFGVKIF*
Ga0134406_1001373Ga0134406_10013732F047125MDVALLLMVLGVMLSGFRAADALDYMRKEILRQEGKRRGWWS*
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