NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300014824

3300014824: Human fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P279T2



Overview

Basic Information
IMG/M Taxon OID3300014824 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121299 | Gp0151664 | Ga0134492
Sample NameHuman fecal microbial communities from ulcerative colitis therapy, University of Washington - UWIBD01P279T2
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Washington
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size407332508
Sequencing Scaffolds18
Novel Protein Genes19
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1583
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Commmunities From Fecal Microbiota Transplantation (Fmt) For Ulcerative Colitis - University Of Washington

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: University of Washington
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026489Metagenome197N
F032286Metagenome / Metatranscriptome180Y
F042936Metagenome157N
F051936Metagenome143N
F052660Metagenome142N
F056682Metagenome137Y
F067845Metagenome125N
F068811Metagenome124N
F068855Metagenome124N
F071325Metagenome122N
F074899Metagenome / Metatranscriptome119N
F076189Metagenome118N
F078693Metagenome116N
F088920Metagenome109Y
F097493Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0134492_1000110All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium130818Open in IMG/M
Ga0134492_1000171All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii103906Open in IMG/M
Ga0134492_1000381All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales68078Open in IMG/M
Ga0134492_1000487All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii58387Open in IMG/M
Ga0134492_1001258All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium30440Open in IMG/M
Ga0134492_1001466All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae27315Open in IMG/M
Ga0134492_1001607All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium25605Open in IMG/M
Ga0134492_1002130All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM15820803Open in IMG/M
Ga0134492_1002261All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales19722Open in IMG/M
Ga0134492_1002741All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM15816941Open in IMG/M
Ga0134492_1006398All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM1588111Open in IMG/M
Ga0134492_1008451All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales6323Open in IMG/M
Ga0134492_1010613All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium5114Open in IMG/M
Ga0134492_1011237All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium4848Open in IMG/M
Ga0134492_1013204All Organisms → Viruses → Predicted Viral4185Open in IMG/M
Ga0134492_1036965All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides1590Open in IMG/M
Ga0134492_1040037All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales1482Open in IMG/M
Ga0134492_1068197All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes951Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0134492_1000110Ga0134492_10001102F067845MKHWKNLLVCLLAGVLALGVLTACSGLGSVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADGNMGYTDNLNHFLFWSGCYGVPEDVTVALLLDDSTAMTAQLYAPQADSAAAELLKDAVGHSKMGAAFIDYNGTAYVVAVFR*
Ga0134492_1000171Ga0134492_100017150F026489LTPKENQKSASDFDALEPRKRGCSPLLTPKKWATPEKTEDSRLFGVKIF*
Ga0134492_1000381Ga0134492_100038157F032286MRSMVKWVCQTVTSVRHRALVFNTWLFAGNAADDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISLFSLALIFIFDFAALSERRSCPEDRSRRFVPVGTLTLSRSWRLLRWGTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQNRKRAEI*
Ga0134492_1000487Ga0134492_100048736F026489LVAKENQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKIF*
Ga0134492_1001258Ga0134492_100125812F068811MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKVAVSLILNKNVSETLCIFSIDKTNCCRI*
Ga0134492_1001466Ga0134492_100146624F071325DFPSRLRFHKFQYCSIFKVLLALLLDSSIIISKVVLFVKHFFDIFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL*
Ga0134492_1001607Ga0134492_10016076F078693MNGFSRWWRGAERFCSKANVLFCVPKENQKSTSDFDALDPRERGCSPLSDPKGEVETEKS
Ga0134492_1002128Ga0134492_100212821F078693LRAKREPEKHQRRAPVRGAERFFIKADCSLLMSKENQKTTSDFDALDPRERGCSPLSDPEGEVETEKS*
Ga0134492_1002130Ga0134492_100213022F068855VPTVEAQGPQARKSLAPQGLQAEKERENANVQNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAAW*
Ga0134492_1002261Ga0134492_10022614F042936MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNVEKVEQKRALTPPYLGKVYFRLRLRGKG*
Ga0134492_1002741Ga0134492_100274123F074899QAATSSFLDKKPPQSLVQQGLEGSTAVGKDEVGSSNLPSSSK*
Ga0134492_1006398Ga0134492_10063981F074899MSGRKQWNKQAATSSFLDKKPPQSLVQQGLEGSTAVGKDEVGSSNLPSSS
Ga0134492_1008451Ga0134492_10084513F052660MCILRILPENTPEKIGQERAGTEWTVVKSKIRLRIRNRSCGRFLHGGILMGIALPIPSHRAKSHDFAYWWPAAAGHSRSADALPGKSNS*
Ga0134492_1010613Ga0134492_10106133F088920VSARPHYYLAFGAGLILHLILHFSQKAAIFAPKRAILLIFVPTLFFACLAVFSLHTSPKISGQTSLYQPWLSSYCLFKD*
Ga0134492_1011237Ga0134492_10112373F076189MPGRLCYLPGIAFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLRAIQSAQKQLRMLYNFHENTFGLLIFYANYAIL*
Ga0134492_1013204Ga0134492_10132042F097493MYKFYVKNGTAYFYERGVEIDGTVYGIRTDRDILRIKRNVVNNKFAETDDNFDMDTEIAKIQHTDVTFEQPTAEQLEQIQAKTYNSMTELKQHVQSVMNGDETMSQDEINAMLMLQIAELKAGVDGE*
Ga0134492_1036965Ga0134492_10369653F051936EQEGTGQVLFFPLALRGKAFGFSVLQEHAVMTPVISIFFLMLIIRYLSIHISIKK*
Ga0134492_1040037Ga0134492_10400371F076189VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELLACFDLHAIQSAQKQLHMLCNFHENTLGLLIFYTDYAII*
Ga0134492_1068197Ga0134492_10681973F056682QNTMKMQSRAGKVANQSIRQGEIYSASFGTFPSKNRSTFPIQKLGKIHENQEVL*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.