NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300014831

3300014831: Raw sludge microbial communities from sewage treatment plant in Sweden - SWESTP63 - Kappala-primary 226



Overview

Basic Information
IMG/M Taxon OID3300014831 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127417 | Gp0192501 | Ga0167340
Sample NameRaw sludge microbial communities from sewage treatment plant in Sweden - SWESTP63 - Kappala-primary 226
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Gothenburg
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size467169048
Sequencing Scaffolds12
Novel Protein Genes12
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter propionicigenes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Lillamyvirus1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Lactococcus → Lactococcus raffinolactis1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin2161
Not Available2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P93121

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSewage Microbial Communities From Wastewater Treatment Plant In Sweden
TypeEngineered
TaxonomyEngineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Raw Primary Sludge → Sewage Microbial Communities From Wastewater Treatment Plant In Sweden

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationSweden
CoordinatesLat. (o)59.355554Long. (o)18.227079Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003622Metagenome / Metatranscriptome476Y
F010914Metagenome / Metatranscriptome297Y
F030759Metagenome / Metatranscriptome184Y
F060985Metagenome / Metatranscriptome132N
F062845Metagenome130N
F067844Metagenome125N
F067845Metagenome125N
F074867Metagenome / Metatranscriptome119N
F076005Metagenome / Metatranscriptome118N
F089054Metagenome109N
F095356Metagenome105Y
F096161Metagenome105N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0167340_1020009All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter propionicigenes2543Open in IMG/M
Ga0167340_1040118All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1569Open in IMG/M
Ga0167340_1053372All Organisms → cellular organisms → Bacteria → Proteobacteria1284Open in IMG/M
Ga0167340_1111174All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Lillamyvirus784Open in IMG/M
Ga0167340_1115969All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Lactococcus → Lactococcus raffinolactis762Open in IMG/M
Ga0167340_1145027All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216661Open in IMG/M
Ga0167340_1147012Not Available655Open in IMG/M
Ga0167340_1149171All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae649Open in IMG/M
Ga0167340_1158293All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae625Open in IMG/M
Ga0167340_1168181All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii602Open in IMG/M
Ga0167340_1193101All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P9312550Open in IMG/M
Ga0167340_1196334Not Available544Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0167340_1020009Ga0167340_10200091F096161SWRKKLSCLSDKGASLDGFSQLSASFSSEAGAVLTFLFTFCVKTKSKSGLGAEAPVK*
Ga0167340_1040118Ga0167340_10401181F067844MNTLAAETTSAWYLILNRKRQTLPIYISQLSSHLPRPLTMGTQQVSAGADV
Ga0167340_1053372Ga0167340_10533722F010914MIYKILVEQNGKFVATGETIECEFEETQAVIDELQLEHGCCCALEAVNE*
Ga0167340_1111174Ga0167340_11111743F003622MRSYKNELEAIANDLLTQNAEAKGNENKPNYSNRDFMNAVIIFQTALMDKMYDNQNGMSLDERMEMAERCGLDLRKLIHTYTGLDIHKFEEFL*
Ga0167340_1115969Ga0167340_11159691F089054MLTKGEFLVSFEVPGHTKEYTEGFTEEMVIPYRTEELNPYLRYPNQEINNNHLHSEHIRLQIREILQIPLRDITIIDIISLP*
Ga0167340_1145027Ga0167340_11450272F030759VKFLSWFGTFASIIGSFVVASQIFLLGYCFFIAGSVSWLLVGWLRRDASLMVLNGTFMLANFWGLYVAI*
Ga0167340_1147012Ga0167340_11470121F095356VSVGDDAMITAPVAKALLEHDPKLIPVILGCLNHFEIAIDDKQIAPQRMTTPPQARQFKTLGAAYSYLRNFLDYRGDVSIRLSDPTTGTGDIL*
Ga0167340_1149171Ga0167340_11491711F074867GITDIILNGEAFELHPTFSNLDKLETVLNKGAIGFLRQDLSSGAFKAGDVVSIIQVCAVPANGRKFPSWWTRDGVGEAVIGAGLVNVTTSVTHFLAKALTAGTETDIKTVGSESDEKK*
Ga0167340_1158293Ga0167340_11582931F060985LVYNILIWISIMSNIDEKAKNNFTIEMRIFENYEKVKHEIIKVIDFLRHAETNLGMCRIFDNQNHELWHSVIKPWFQPERFGITHLWFPSGFSHIGYGEYHIIRGNRWMKTPIDKIDRENRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD*
Ga0167340_1168181Ga0167340_11681811F067845LLAGVLALGVLTACSGLGGVNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADSNMGYTGDLNKFLYWSGCYGVPEDVTVALLLDDSTAMTAQLYAPQADSAAVELLDDAADHSELGAAFIDYNGTAYVVAVFR*
Ga0167340_1193101Ga0167340_11931012F062845MKKTPFILHEKFRSDNNEQRKEHFQNEFERYIVDELSNTALSKSCA*
Ga0167340_1196334Ga0167340_11963343F076005IMKHFKVRVQYTNGIDFLFECDAVTGWQAGALARVAGRLAGFGGSMDVKETIVVEV*
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