NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300014947

3300014947: Human fecal microbial communities from infant at 12 months in Denmark - 589_12M



Overview

Basic Information
IMG/M Taxon OID3300014947 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127429 | Gp0193800 | Ga0169813
Sample NameHuman fecal microbial communities from infant at 12 months in Denmark - 589_12M
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size131465733
Sequencing Scaffolds7
Novel Protein Genes8
Associated Families7

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → [Eubacterium] rectale1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae1
Not Available3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationDenmark
CoordinatesLat. (o)55.678Long. (o)12.531Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026592Metagenome / Metatranscriptome197Y
F054110Metagenome140N
F067844Metagenome125N
F077405Metagenome117N
F078004Metagenome117N
F090514Metagenome108N
F099269Metagenome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0169813_100555All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → [Eubacterium] rectale45166Open in IMG/M
Ga0169813_100813All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii32337Open in IMG/M
Ga0169813_102692All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens6789Open in IMG/M
Ga0169813_104260All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae3957Open in IMG/M
Ga0169813_115968Not Available915Open in IMG/M
Ga0169813_118040Not Available793Open in IMG/M
Ga0169813_126067Not Available535Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0169813_100150Ga0169813_10015048F078004LSSRNTDLLFRKSSAGGLSAVAGSAALDIYMIRHTLIITVIDALYRLTVDADGMAWMRQGITERFSSLSLLCKAFTAGSVTVAGMLASHHDITLAAQTILIIGTIFHNTF*
Ga0169813_100555Ga0169813_1005552F067844MNTLAAETASAWYLILNRKRPPKRAVASYFNMTQFSSHLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGGP*
Ga0169813_100813Ga0169813_10081331F090514MNLRIHALKKASRQRPGVKIAAARFFSILYYPFCAKRSSFFQQNVQPRGNFFANRPIFVYFADILPRLTGAKWFVILLTIVPAGSRTRAGSSLPLSPASIFF*
Ga0169813_102692Ga0169813_1026922F099269VQVGELLLLDDLGDRASGASVLASATGDAGVLVSDGSDVLELQNASRAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCAPV*
Ga0169813_104260Ga0169813_1042601F077405GRALPTELFPRLLVAKQRGVFYGFISLCQIKFVKKVFDWLKIVQK*
Ga0169813_115968Ga0169813_1159681F026592LCCLRTASPQGIAALAAQGGVATLTERSDATFSVGQFSSADRE*
Ga0169813_118040Ga0169813_1180401F077405GRALPTELFPRLLVAKQRGVFYGFILLCQIKFVKNFFDWLKIIQKQKVRLK*
Ga0169813_126067Ga0169813_1260671F054110VDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGE*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.