Sample 3300014964

Basic Information
IMG/M Taxon OID	3300014964 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0121305 \| Gp0151710 \| Ga0134538
Sample Name	Mouse gut microbial communities from Hong Kong to study the effect of probiotic LGG - Control W8
Sequencing Status	Permanent Draft
Sequencing Center	University of Hong Kong
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300014964 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0121305 | Gp0151710 | Ga0134538

Sample Name

Mouse gut microbial communities from Hong Kong to study the effect of probiotic LGG - Control W8

Sequencing Status

Permanent Draft

Sequencing Center

University of Hong Kong

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	440514803
Sequencing Scaffolds	11
Novel Protein Genes	20
Associated Families	20

Dataset Contents

Total Genome Size

440514803

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum urartu	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Stipodae → Brachypodieae → Brachypodium → Brachypodium distachyon	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

Not Available

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum urartu

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Stipodae → Brachypodieae → Brachypodium → Brachypodium distachyon

Ecosystem Assignment (GOLD)
Name	Mouse Gut Microbial Communities From Hong Kong To Study The Effect Of Probiotic Lgg
Type	Host-Associated
Taxonomy	Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Mouse Gut → Mouse Gut Microbial Communities From Hong Kong To Study The Effect Of Probiotic Lgg

Ecosystem Assignment (GOLD)

Name

Mouse Gut Microbial Communities From Hong Kong To Study The Effect Of Probiotic Lgg

Type

Host-Associated

Taxonomy

Host-Associated → Mammals → Digestive System → Unclassified → Unclassified → Mouse Gut → Mouse Gut Microbial Communities From Hong Kong To Study The Effect Of Probiotic Lgg

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal proximal gut

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal proximal gut

Location Information
Location	Hong Kong
Coordinates	Lat. (^o)	22.3356	Long. (^o)	114.1826	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Hong Kong

Coordinates

Lat. (^o)

22.3356

Long. (^o)

114.1826

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F020492	Metagenome	223	Y
F020828	Metagenome / Metatranscriptome	221	Y
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F059631	Metagenome	133	Y
F064725	Metagenome	128	N
F075481	Metagenome	119	N
F076653	Metagenome	118	N
F077313	Metagenome	117	N
F078005	Metagenome	117	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F093883	Metagenome	106	N
F099451	Metagenome	103	N
F102167	Metagenome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0134538_1000070	All Organisms → cellular organisms → Bacteria	125153	Open in IMG/M
Ga0134538_1000616	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	36114	Open in IMG/M
Ga0134538_1001394	Not Available	20289	Open in IMG/M
Ga0134538_1001828	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	16417	Open in IMG/M
Ga0134538_1002954	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	10700	Open in IMG/M
Ga0134538_1003167	Not Available	10037	Open in IMG/M
Ga0134538_1004061	All Organisms → cellular organisms → Bacteria	8026	Open in IMG/M
Ga0134538_1011979	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3261	Open in IMG/M
Ga0134538_1049353	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae → Triticum → Triticum urartu	1200	Open in IMG/M
Ga0134538_1132154	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Triticodae → Triticeae → Triticinae	626	Open in IMG/M
Ga0134538_1145764	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → BOP clade → Pooideae → Stipodae → Brachypodieae → Brachypodium → Brachypodium distachyon	588	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0134538_1000070	Ga0134538_100007088	F099451	MSEIKTVGDLRKVIANLDDSFKIEMRIRRKLTDEELKYMPYPYPYETEYSTLEFDDIGYSDKELCLGVERGQNNE*
Ga0134538_1000616	Ga0134538_100061610	F058555	MKLVYSQHKKKTMGTKISILHKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAKSLICPVDYKPVTNKDGKKVTAIRYSNKKDNIRGSGMVIEKKCKQIVAYLTIINVQKHVFLRNRMNKGYRDRIEINTDDFIDILSDGIAYFCYRHVLENCHEDTDYQLKTLKAYAEGEIRIALADVMIYTHKVKKNEDTKDIFVGKKRSVYKCLNKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVSYLMIELSKRLTSMGMHNISQATMYRYINMFLDMCKKTISDLYDEVKKNNGIVNLKDRNKVNIGHLRLSYRGTKMYVLISADYIKNVFLGEKPVEMSKAG*
Ga0134538_1000616	Ga0134538_100061625	F102167	MDINQIKKYLPAGWNVVDLIDHGIIDLDIMNGKMMGEYVAMLMIRSCEKATKSYTLTSFSFHDKDMDKLRMLIGNAIMAVGYRNNPLTGDGNTAIK*
Ga0134538_1000616	Ga0134538_100061636	F057001	MTGKDLNKVQNEVKKASEKTLTGAVKAWCQLFKSGKEINEILKDNDIKVDKAIVPALVNLAKDKEIVIQLCKEILPRVNNTFCSYKEVEREYYDKNDQDKNKKLKINEIEDIAILGSSHKRFGYNEPIEFDFGIYYDTFNDSDKRIVKCAIPIKRYTFNLIAKCVTYYLTHPKNER*
Ga0134538_1000616	Ga0134538_100061642	F080673	MDEIIKLQDEILSYFRNNITKDEAYYILTTDKDIIGILIADKKDGSKRIKILDMEYTVEKDDMLLLFDTDRIIDECLLVATYIGVNMYFRRQDVNAILNNINREKVMEYPYIAIQLDNIRTIEKRRVIFEITGHRMDDNKERIDFMFIYFMARLCV*
Ga0134538_1000616	Ga0134538_100061647	F078006	MEDNILKRAAAELKEAGCRVFAWQDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGLGCCIKEEATFDLATALDALNGPLPRWCKAYGVYPKQYDNIDKWYNRDNHNKKLFKEI*
Ga0134538_1000616	Ga0134538_10006165	F093883	MEEDKDIKKEIRYYLKEEADTHIRHWIAIKRESKRLYSDIEDRTKKIALKSSSLIKEEDFVVLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKGIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYKLLMKQYNEFKDMKANATGKTKADE*
Ga0134538_1001394	Ga0134538_100139415	F089591	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAGRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEATDFVMWEAKNENIHELLGDENNRPSYDYRETFYSIGNGKVVVYEDGFRTDEVRMTYYRNPVRVDLAGYINAAGERSTDIDPELPDPLVEEILDMVAKQFNLNENELSRYRMDKDNVASFK*
Ga0134538_1001394	Ga0134538_10013946	F075481	MRLRISLRAVFCLGLSLFLSSCGSRRQVSEASIDSRLISRIETMINEVIDRKMVEIKTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGQRDSTVTTDSIGIDKTITGIEDIDKKTDIEHEDVDDKKESRWPIAITSISVLLILLVLIYLLKKMKVL*
Ga0134538_1001394	Ga0134538_10013947	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKKWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFKRINVFKMFGFSKNIPDETFDDIRRIADDEVKDKS*
Ga0134538_1001394	Ga0134538_10013949	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPFNTYVEFRSRKPGMANVDWGDGIKEQFPMTKVKGEDNYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQICKMTSFPIVDIPGLEFLIVSNTLYVNDGIPVDKLSRSKKLIYIDLQYIGQRMTVMPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLRIYPGPSDIWNYFDINTLPFFEVDKINPNITNFYFLNDWVSGGRRTGWNDDNMSGRGLEHLTSFIADHSNSLRMDKLPDYIYEMRAITWFDVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYSATYPTENQRPSGTEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQRWTIKPA*
Ga0134538_1001828	Ga0134538_100182819	F064725	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKLYIGSHEVRFHYHHPVRLSIGRGLRRDCASDKYRDKYAWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSHERMWPNAFDKYIKLI*
Ga0134538_1002954	Ga0134538_100295413	F083451	MIMDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKCRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDEMREMIESMVGDNIREGYDMFKEEAEMVNETDRSKIEEFNKKLDHDQM*
Ga0134538_1002954	Ga0134538_10029543	F076653	MTIRDKYFGWKDIFFSRFVHCCNEKSDQPQGSNIPLAKINFDNKTGYVEDGTINIAELLQYLWINNKVYGCEYAPIDISSVLQTLIRLTENAKFIFDDQPGIHDMIPYRGFFLRDDFLPGKDYSLDLDKIVSGMGGWYGEDEDPCYSMFVSQDQIWNLNPILKVLADEGSILAKELGYDMNSYVSDNGYTIYNPYLSWINHYYHYCPTFNEDKLKPWDRMEDRKNKFKMTDKVKRGANNWYYSGGTISCVDNFLGKEYRKNLRTFIYRGIVFFLDRIWHTPLFEKMGVKMKYNAYYCYAATSGIWYSKGFKERLAKRFNRSLSGGGEPFGANLACMVCDRKDIDWEALRLWLDKYDDPTDKGMVNSPIQFMYLYLYYTFNK*
Ga0134538_1003167	Ga0134538_10031674	F077313	MGKYVIKRKIPKYQDAGEVTPIMPGNVVGLQGIGVEPLVSSTQIGFDIQQPDINTIDTSNLSALVDSNKKVDKSGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTRAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKANIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIADAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMRASEGARARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEEPDVKLDMPELIDPNTLPKTNTNAGKSNSGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG*
Ga0134538_1004061	Ga0134538_10040618	F050794	RDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIKAMMCDLLDELKDDIDLNILIFDVSQLLIKYNLFRLEAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVMMIETRYNRFVW*
Ga0134538_1011979	Ga0134538_10119793	F078005	MKKSEFVKKLEKIIDMVKTEDDGFEYGGKVILYKEDDSNYEVSVMNIEMNLEVEANVMAGMDDMDFTCLMSEVYKQKAAKAIMMEKDDDEDN*
Ga0134538_1049353	Ga0134538_10493533	F020492	MGLQAALLTSAALTAEVNALKESLERSENELGLAKKQLEDKEGE*
Ga0134538_1132154	Ga0134538_11321541	F020828	ELAMKDLIVRMWPGEPLPDSYFGLIKRMVNACPQLEVIKQSICIEGARRALARAKVHWGKLDAEKLVKDGPPPGKEHRKPENYCKDVLKGACLVADECSRDVIFE*
Ga0134538_1145764	Ga0134538_11457641	F059631	NISAFIIVCEAFLRIQPHFGLWLKTFNVKPKVVGIQQAECGGAMVGKMPNVLWLEGSFVETIKGWQSGWFYITEPRDTNWVAAPEFRSGIPTRLTSWKEKGLFWGSLTELTGLQTCIRNMMSKKIKLVNVVQVMLFRRILLCQRRAFNLWEFDPTEHQTLQELFDTMHKDVWKVLFKGAEVPPPLTEDRGLSAKRP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300014964: Mouse gut microbial communities from Hong Kong to study the effect of probiotic LGG - Control W8

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences