NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300016677

3300016677: Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES072 metaT (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300016677 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0126301 | Gp0197892 | Ga0180053
Sample NameDystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES072 metaT (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size5393199
Sequencing Scaffolds6
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → epilimnion → lake water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Wisconsin
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)N/ADepth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002908Metagenome / Metatranscriptome521Y
F006061Metagenome / Metatranscriptome382N
F009205Metagenome / Metatranscriptome321N
F009742Metagenome / Metatranscriptome313N
F010909Metagenome / Metatranscriptome297Y
F018531Metagenome / Metatranscriptome234N
F055418Metagenome / Metatranscriptome138N
F055420Metagenome / Metatranscriptome138Y
F058730Metagenome / Metatranscriptome134N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0180053_103866Not Available538Open in IMG/M
Ga0180053_107470All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex531Open in IMG/M
Ga0180053_108341Not Available613Open in IMG/M
Ga0180053_108995Not Available637Open in IMG/M
Ga0180053_110031Not Available630Open in IMG/M
Ga0180053_111074Not Available523Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0180053_102830Ga0180053_1028301F010909GSSFTLYRDLTTEATLGATQMKMLNRLRNTMIEHDFQTRDRQKANLPPSLKTGQITNKPEPDITFNEVIHVDLIKTDSVGSDASASTILSITDHTRTLTRLAVLTDDKINSVATSIWHQWCLPYGNPTTIKSNTGKVWTSKLENRLSKLNQDGPKIICRSEKETFFPEIQQQW
Ga0180053_103866Ga0180053_1038661F006061CLGALYLANAKDIQNRCKFSIGGAQEKIFRLDSNTYVVYSLGKINTNHVCPKAKSISAIQISSGQTVRVNPSCYVRTMDHIITADDSKELEIHSKWLDWTWTLGQLFQQPENDKVTKAIDRLWERIAGRFDADILINELETMTKEAKEEPLTHWIFTTPGAMLGGAVLSLLLLFCCWR
Ga0180053_107470Ga0180053_1074701F009742MPRLLLAFLLSLRLPDIEAKEAVIFEQFGQLAGITAYLHVHVELSISSVEAQLGKYRQLLKQNCDSELSVLNYMLTYVNTSITNFTLKKDYPDRPEDFPEKSMIRQNAKLWYKVAQLHLRDLEDMEESIAILSKSLPVVPNRNTGKIPVQAQYAPPQGAHVV
Ga0180053_107509Ga0180053_1075091F058730MNNDQVIPPVNPVNPVNNDGNDGDGVQVPIHHAQAVQGADGGISLKVEQTKLPEFWGQKEKDSITANAFIQRVDNMMAA
Ga0180053_108341Ga0180053_1083411F002908MANNDDIQVDLNQDQDGQVVQNAPAGAQTTLAFRVDQSKIPEFWGQKSKDTVTAIVFIRKIEDLARTNHWTDTATYANVANGLKGFAREWLFATADMLDWTDAQLTWTNLKPRFQKQFATQTDDKQIIEGLSNLAMGPNETTGELLARITNLMVIIKESYAAYNNKAPEPPTDAQGLGRVGLVENTAKQWTNDTAN
Ga0180053_108739Ga0180053_1087391F055418VEQQLSKYRQLLITKLGTEESIRNFMLGQFTPTPRPGVTTPAPEYLGNFTNSAAATIRANSMLWQRIASLHLRDVDDIEHHISSLRNALPPLPGQNPDQIHVKSPFVPPRANADQLLVHPYPDTHDHLLFAPKDETRKHTSRGLNPYDPHGEERAKSAKSGPITGSTTTSDPASKPKLHGRKKRNPDPVLTSRPLTEEAFDQMVPVRERRGVLGAVALPMAVA
Ga0180053_108995Ga0180053_1089951F009205EVDLFIKGKKFTHPVNVIEELNENIIGIDFIHAHKLTYDVISRKVMFAGAGTNSIMALKNTVLPAMTSTVIKAKFKGTRDEKATYVANICAPRTPMVSGMPSIVNIDENNICNIIVENCAPYDVTLERDDILGVMETETEELVPLTDDFISSVCQDIHNRFPKVKKKRLSRDEVKRRCHLQVPEEFHERYLDILCKHQDALSIDKYDLGLA
Ga0180053_110031Ga0180053_1100311F018531LNVAKLKHFYENVEKSAEKESEAETFNQNFNQSENAHHDFNDIFNKARNEGPVTRAKAKLIKYQDAAQLALLLLKSENDTINSLCDPSKHCGRCESEETYLAESKTLPFQWRQLKLAENRCKQWRLKLMKREAKKINSTEERCHSNVPERFCEPLMKVAYKLLSRDEATFEELTPSEQKLWNSFETDQIYRLLTGEPDTVPEFRFNWYT
Ga0180053_111074Ga0180053_1110742F055420AQGRYYWPKIYVMDDNDAKTVSSIDHEDETRQHSGHIAEISNAHSSPNTRTAALSPDYSGFQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.