NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300017029

3300017029: Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 20 C, 35 psu salinity and 438 ?mol photons light - Hemiselmis virescens PCC157 (MMETSP1356)



Overview

Basic Information
IMG/M Taxon OID3300017029 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211888 | Ga0186176
Sample NameMetatranscriptome of marine eukaryotic communities from unknown location in f/2 medium w/o silicate, at 20 C, 35 psu salinity and 438 ?mol photons light - Hemiselmis virescens PCC157 (MMETSP1356)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size23274782
Sequencing Scaffolds17
Novel Protein Genes18
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae9
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27126
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae1
Not Available1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005668Metagenome / Metatranscriptome393Y
F010032Metagenome / Metatranscriptome309N
F011850Metagenome / Metatranscriptome286Y
F019282Metagenome / Metatranscriptome230Y
F019841Metagenome / Metatranscriptome227Y
F020015Metagenome / Metatranscriptome226N
F021541Metagenome / Metatranscriptome218N
F025760Metagenome / Metatranscriptome200Y
F026478Metagenome / Metatranscriptome197Y
F032673Metagenome / Metatranscriptome179Y
F087277Metagenome / Metatranscriptome110N
F096687Metagenome / Metatranscriptome104N
F101267Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186176_106801All Organisms → cellular organisms → Eukaryota → Cryptophyceae1031Open in IMG/M
Ga0186176_106838All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27121029Open in IMG/M
Ga0186176_106996All Organisms → cellular organisms → Eukaryota → Cryptophyceae1015Open in IMG/M
Ga0186176_107008All Organisms → cellular organisms → Eukaryota → Cryptophyceae1014Open in IMG/M
Ga0186176_107730All Organisms → cellular organisms → Eukaryota → Cryptophyceae954Open in IMG/M
Ga0186176_107828All Organisms → cellular organisms → Eukaryota → Cryptophyceae947Open in IMG/M
Ga0186176_108827All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae871Open in IMG/M
Ga0186176_109336All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712835Open in IMG/M
Ga0186176_109674All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712810Open in IMG/M
Ga0186176_110955All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712733Open in IMG/M
Ga0186176_111596All Organisms → cellular organisms → Eukaryota → Cryptophyceae697Open in IMG/M
Ga0186176_112076All Organisms → cellular organisms → Eukaryota → Cryptophyceae672Open in IMG/M
Ga0186176_112752All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712640Open in IMG/M
Ga0186176_112910Not Available633Open in IMG/M
Ga0186176_112927All Organisms → cellular organisms → Eukaryota → Cryptophyceae632Open in IMG/M
Ga0186176_113481All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712607Open in IMG/M
Ga0186176_114249All Organisms → cellular organisms → Eukaryota → Cryptophyceae573Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186176_106801Ga0186176_1068011F032673ATLGKMVCIADYGSVGGAAPKMPRNNMRLLAGVMALAAVALVAVGTLSTPQDDGMATLAAFNKQEMNNMLVKAKTMSTSQLQKEVNELEAERQDGETRTSQLVTVNQNTAANPEGGVLENVPPTIVAPVPGPPDFNGASAVIARLPNVGFAPSMLTEKGFETRGTFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLMGDFTGNTIYTGFKHIYNGKSQIQTGHIPRGIVGEFDIMTCRDVGNGEVQYFRIRYS
Ga0186176_106838Ga0186176_1068382F019841MFTLLAAVAFEQAGTADTGYAGSAGPVPQKWVNGNGTSYIYFGSGQFDGQGSGHDFYGTLFMPPTGSVNNCDGGRAHTYCDYRQQ
Ga0186176_106996Ga0186176_1069961F020015AYAGAHSFGRMKEGAPAYAAVVERSSDGSAKRRQWMMQAAVVAAIGLAAVVCVGLVVHERGGASEGREELGGAYYAVAKPPAFNFNRFIRHAWVYDGRAADPDMTNFVEHVARKHHYKLQIHHLTSFKDNAFRAALFSENIHAIVFPPLVHFPGVSELAAKDLRGYVSAGNNAVFIGSYNWLSVMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMARLQQPDGSVYGVKVDSIPMDGKCMFDTMGACVVFYIKYNLGTVTYIAFDYDTPYGIDHWDQILHAGMMM
Ga0186176_107008Ga0186176_1070081F011850RETCNFSLDRAEMFSRVALGALALVAGAEAFAPGGLPTTGARLSLRQTSSRKAMAVGPNMLDVSSITEGAQYITASVANVPFVDEITGEPQGFTAPLNQFASVIGLWVLFSLPVWSAAYKKAGGRTFDWVGVSQVTQEAPGIGAFPRYTPAYDGPSFTEGLTYFFSFFWKPPILIAWKPRTDLDLATMDPSRETVVSSLYKGFGGALDKDAYYDEQDQLLILSDIVTFAETDLGRRREKIAEENGWYQGNPSFGKSLIEYSEETKKGVKDFGTVTISAAELAALRAEAARQK
Ga0186176_107730Ga0186176_1077301F010032IFTKGHSTMERPSLRLLNTVSASLALCLLALAGWHMQNRSTHFELFSSSAAAVAPQQTTELSFLQTSKFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTVVRLFTSLDDATVRAVLWDSSVHCLVWPPLVAYPGLSETAKTDLRAYAAAGNNVIFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQFLPSRIEQASIETYAVKTRSLPPGGKSMLDTLGATIAFAVRYDMGTVCYVGYNYNTPFHADQWTRVLHSAVDM
Ga0186176_107828Ga0186176_1078281F087277RLRLSTMAQPCEFKRRARMAMAAVSATAMALVVVICLLESGKQQAPISGGEQWLEDGRASVNMFRVARSPMMKAALRGAPLPRQVHYYSNVGDRLPVLGDEERETRQTFQELVQLGHTCVVMLRRAIWSVDPTVFKPQYNLQVHLDAVHTALGQLAAQTGVYLTNPPVVNVDESVFDDAASDVSRFRKLVERIPEMHNAQFYWVVQYNVIRTELRKASSELTEVVNIAKHHFLEVADSIDSMRMNVEAIHE
Ga0186176_108827Ga0186176_1088271F010032HGKMVSGRALNTVSCAAALMCLTLGVVHFRSSRPTALFQKAAVPVQQTTELSFLQTSSFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTVVRLFTSLDDATFRAVLWDQSVHCLVWPPLVRYPGISETAKTDLRAYAAAGNNVIFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNVRNTPFQFLPSRIEQASIETYAIKTRSLPPGGKSMLDTLGATVAFAVRYDLGTVCYIGYNYNTPFHADQWTRVLHSAVDM
Ga0186176_109336Ga0186176_1093361F021541MADVSLLSPHHQMFSTLYGQTAAALYAKAAGQNAQARQLYNASADTYYKANDAAAYDDWVRARNHWDYFYNRS
Ga0186176_109674Ga0186176_1096741F019282MFSLLTLTMLGCKDDVNTINTWAEPHNANGITPNTVIDSNDEPPKNNQQRMAARCY
Ga0186176_110955Ga0186176_1109552F021541MPGATLQSLTPSPLSTPRFQTLYGQTAAALYAKAAGQNAQARQLYNASADTYYKANDAAAYDDWVRARNHWDYFYNRS
Ga0186176_111596Ga0186176_1115961F020015AGAGSDVAMGGAYYAVSKPPAFNFNRFIENTWIYDGRNADAGTEGFVEHMAKRHHYKLNIHRLNSLRDNEFRAALFSRNIHCIMFPPLTHFPGLSELAKKDLRGYVSSGNNAVFIGSYEWLSIINDAFGFQLMSDYKEGPFYRNDRNVRGTPFQWSMSRIQQPDGSIYAAKVDSLPLTGKCMFDTMGACVVFYVKYNLGTVAYIGFAYDTPYGIEHWDQILHAAMMM
Ga0186176_112076Ga0186176_1120761F026478KMAPRLLCVAVACLLAVATLTDAAKPKRKTVSISDEETVKARDFALSEIIKLSDSYRDLKFTKVISAETARSAFADGTNYFLKVEIECTSVCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDYDEGAAKTEL
Ga0186176_112752Ga0186176_1127521F019841MFQFLRSVDFDTGYAGSGGVGPQSWENGNGTSYIYFGSGQFDGQGSGHDFYGTLFMPPTGSVNNCDGGRAHTYCDYRQE
Ga0186176_112910Ga0186176_1129102F005668MFQLMFDLGEYATTYRATRDAYLKAANELKLATGPYKAARDAYVAATATYTKSLYE
Ga0186176_112927Ga0186176_1129272F101267NRTAMGCCSSRPPGAHEWQSQVPGSYKQNPVPIVNKKKDLPPDFFIKCYMKGWLRTMPKKQRIWCMIHDNNFYFMDSEEDTEPRKFFCYDGCLVNLKGKELEIQTAELMGGSVPRATYKFIAEDEEKALEWYEASLKASSRRN
Ga0186176_113188Ga0186176_1131881F019841VEVVARALAVEMFQCLAVARSVDFDTGYAGSGGVGPQSWVNGNGNSYIYFGSGQFDGQGSGHDFYGTLFMPPTGSVNNCDGGRAHTYCDYRQQ
Ga0186176_113481Ga0186176_1134812F096687VCPFEQGRRMRELLYGKKAAALYTQAGDYQKTARFYYKKAEDTYYQANNWASYDDWRRARDQWDYFYSRNR
Ga0186176_114249Ga0186176_1142491F025760MMMPAMRSLYASPNGGRNDPYSMYDTRMGGNWYKADEPWGAYLQGEGNPAVTIHPYESDPSSGSFNPQAHTSWVPVDWSSWPNYNVHGYGIY
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.