Sample 3300017040

Overview

Basic Information
IMG/M Taxon OID	3300017040 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0211966 \| Ga0186254
Sample Name	Metatranscriptome of marine eukaryotic communities from Ross Sea in L1 medium with NH4Cl, 4 C, 32 psu salinity and 517 ?mol photons light - Synedropsis cf. recta CCMP 1620 (MMETSP1176)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	22615853
Sequencing Scaffolds	3
Novel Protein Genes	4
Associated Families	4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Rhizosoleniophycidae → Rhizosoleniales → Rhizosoleniaceae → Proboscia → Proboscia inermis	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	Ross Sea
Coordinates	Lat. (^o)	-77.8333	Long. (^o)	163.0	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F015298	Metagenome / Metatranscriptome	255	Y
F051162	Metagenome / Metatranscriptome	144	Y
F075465	Metagenome / Metatranscriptome	119	Y
F100304	Metagenome / Metatranscriptome	102	Y

Family

Category

Number of Sequences

3D Structure?

F015298

Metagenome / Metatranscriptome

255

F051162

Metagenome / Metatranscriptome

144

F075465

Metagenome / Metatranscriptome

119

F100304

Metagenome / Metatranscriptome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186254_111002	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris	806	Open in IMG/M
Ga0186254_112402	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Rhizosoleniophycidae → Rhizosoleniales → Rhizosoleniaceae → Proboscia → Proboscia inermis	687	Open in IMG/M
Ga0186254_114185	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	547	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0186254_111002

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris

806

Open in IMG/M

Ga0186254_112402

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Rhizosoleniophycidae → Rhizosoleniales → Rhizosoleniaceae → Proboscia → Proboscia inermis

687

Open in IMG/M

Ga0186254_114185

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta

547

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0186254_106647	Ga0186254_1066471	F100304	MKTAAFGLLVAGLSAANAIELTPDNWEASVAGKTVLIKFQAPW
Ga0186254_111002	Ga0186254_1110021	F075465	GVFDQQMDIPIVLTDSEKTQHNSEWRTYRERVNNLIKHRGQAFSLIHGQCTQMLQDRMKQDIGWDTVSVSYKPILLYKLIEKTILSQTEDQYPFATVYDQEHGFYSFRQETMTNPQWYERFNTKIDVGEAIGVTRQHKVLLEYVAKEVHRSDYDSLGVDDKKTVRADAEERYISYAFLRQSGKQHGILKTNLQNDFTTGDDHYPKTRQQTLHLLDKYSKTVVTKAIGSEGTSFAQNDKQGDDRGSDSFDVKYWKNKECFKCNKKGHPA
Ga0186254_112402	Ga0186254_1124021	F015298	NQTHDRQRKNDQTRSNQQTMNGILEYLIAHKDWLLLVCFSVDAVNTLISFPLIMWKGPKWLLKSTDPDAKEKVEDADAKAVVDLTDTDRKSFEVLWEIFGICYEGYFGFTISTLICLFKVPETRPIFAYSLFALYLYKARAFLTTIKTDNPQGKGKLISILFFYWPCYGGYCLLHSIENYFL
Ga0186254_114185	Ga0186254_1141851	F051162	MPLVKIFAKTTMMKTIPLAALQSKLCDIWGTKPNTTKLMLQRVDEWTDESFAEDVYVDIRAKGTDERTREYVLEGMHRVQDAFKSEDLIANVRLETYEGPRYFHLPPPASGSS

Scaffold ID

Protein ID

Family

Sequence

Ga0186254_106647

Ga0186254_1066471

F100304

MKTAAFGLLVAGLSAANAIELTPDNWEASVAGKTVLIKFQAPW

Ga0186254_111002

Ga0186254_1110021

F075465

GVFDQQMDIPIVLTDSEKTQHNSEWRTYRERVNNLIKHRGQAFSLIHGQCTQMLQDRMKQDIGWDTVSVSYKPILLYKLIEKTILSQTEDQYPFATVYDQEHGFYSFRQETMTNPQWYERFNTKIDVGEAIGVTRQHKVLLEYVAKEVHRSDYDSLGVDDKKTVRADAEERYISYAFLRQSGKQHGILKTNLQNDFTTGDDHYPKTRQQTLHLLDKYSKTVVTKAIGSEGTSFAQNDKQGDDRGSDSFDVKYWKNKECFKCNKKGHPA

Ga0186254_112402

Ga0186254_1124021

F015298

NQTHDRQRKNDQTRSNQQTMNGILEYLIAHKDWLLLVCFSVDAVNTLISFPLIMWKGPKWLLKSTDPDAKEKVEDADAKAVVDLTDTDRKSFEVLWEIFGICYEGYFGFTISTLICLFKVPETRPIFAYSLFALYLYKARAFLTTIKTDNPQGKGKLISILFFYWPCYGGYCLLHSIENYFL

Ga0186254_114185

Ga0186254_1141851

F051162

MPLVKIFAKTTMMKTIPLAALQSKLCDIWGTKPNTTKLMLQRVDEWTDESFAEDVYVDIRAKGTDERTREYVLEGMHRVQDAFKSEDLIANVRLETYEGPRYFHLPPPASGSS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300017040: Metatranscriptome of marine eukaryotic communities from Ross Sea in L1 medium with NH4Cl, 4 C, 32 psu salinity and 517 ?mol photons light - Synedropsis cf. recta CCMP 1620 (MMETSP1176)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences