NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017081

3300017081: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with seawater, 20 C, 33 psu salinity and 488 ?mol photons light - Imantonia sp. RCC918 (MMETSP1474)



Overview

Basic Information
IMG/M Taxon OID3300017081 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211986 | Ga0186274
Sample NameMetatranscriptome of marine eukaryotic communities from Pacific Ocean in L1 medium with seawater, 20 C, 33 psu salinity and 488 ?mol photons light - Imantonia sp. RCC918 (MMETSP1474)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size24499004
Sequencing Scaffolds4
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii1
All Organisms → cellular organisms → Eukaryota1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationPacific Ocean
CoordinatesLat. (o)-31.35Long. (o)-78.1Alt. (m)N/ADepth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007073Metagenome / Metatranscriptome358Y
F009840Metagenome / Metatranscriptome312Y
F032134Metagenome / Metatranscriptome180Y
F056539Metagenome / Metatranscriptome137Y
F057823Metatranscriptome135N
F079481Metatranscriptome115N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186274_109025Not Available974Open in IMG/M
Ga0186274_109453All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Phaeocystales → Phaeocystaceae → Phaeocystis → Phaeocystis antarctica943Open in IMG/M
Ga0186274_110035All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii902Open in IMG/M
Ga0186274_112837All Organisms → cellular organisms → Eukaryota731Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186274_109025Ga0186274_1090251F007073FVFFFSSKMKVFVVLLALCVAALALDAAGEGSAGAPNQVVNPPNWHGTWTANNRYGGHMYACPKGNRLYGVYSDAGFFIGSMEGRRVEGTWYEGGRGDRNDWQGSFRIDISEDNQSFDGFYYRVTQDGYELRWHETRLGAPWPSNPTDEQCLVPGDEPLLGGFYNHPGQGNTPATYSLCKDEYDQIYGSFGSPDGFLEGWSVDSSTGFHGYRYDNNGQSGAYILRAISDSHVKGFYWRGRLARQNIATAVEENLTRTSYTASLDDCERVGPGFLRRLRGPTNSAGALTMSVAVVFVALFALLF
Ga0186274_109282Ga0186274_1092821F032134KTYGHASQMAIAGDHARYQWTEQTPEERFAASSRGDMLNFGHPAKIEDGHVTYAHENTNPARANYKKTKPPVLAKHNFHIPGYGGFIPGVQSKNLYGKTQYAATNEALGEHYKRLGTAEAAKKPSTAPPAGSATAPQLGMLQFKPNGFMFQKRMQGEWNNGMLGARNYSAVRLKEGGHWNGDVLFKTTTGDVHTGHGNQDVPHIYSKGPEPTFENMEHALKHKSVYLGFYAM
Ga0186274_109453Ga0186274_1094531F057823CPCSRGEFKGRRVRMEAASRTGSSKGVYKRNGEIMAVPHKVGEASWAANEKSAARGGLSSTTKESFKDPNLKASLTPYHPNAMRSRLPVHFKGEAKPFRRFCQQRNQHTYDFFDKGATGAGFVRFRTTSQNYYEYDTKALAVGESNQGIVSEKSKWIHQKQTM
Ga0186274_110035Ga0186274_1100351F079481LACSSLAANMGTAAGFFGLTYQGAVNGLASNTLSIFNMDHPNDRAWLKLSFDFVAPDDKLRSDQVTDLLQYFYKGRAEGPTQSGSYVHSYPENEATMLRGLCTEAGDSLSFMQLLDALQGAQANFAEPTAPLEYSSNSVMRNDLLKHTRKLYEPQQQFRQPLTTAQEVGWALSKDQCPGRPFHLRTSATTQFSDAMEKQAWGRSIGGEFSAFATKKLLEFGGFGMGV
Ga0186274_112837Ga0186274_1128371F009840PLCGIVMTMLCLAMLWTSAAALVPSSPPRQSVSRRPVVQQAMALPLASLLMPLAVSAAEKKPTLKEVVAQLDASTPKEERNTPPEQKADHFPKIAFEGSQGQGRKVVFTVPHENLSPPSFSSIMYMWIKDENSGAILTAKKFSPSDPNLVITAFASSGQKLTAASKDDKFGIWSGTFVVP
Ga0186274_114700Ga0186274_1147001F056539LILLFACLISLAAAQLALVNPVGRGFSFGDARHGPCGQSPTEVGNRIAWEQDTVHEIEVQIFGAAGGGVIVDRYSCVLNGDDENPIEPILPIEGALKVEVPDVDDQIYRLYVRTPSFRCTGDVTMQLVYATENGHEFFQCQDIVLTYSGASSLTMSVLAVIAVVLMVL
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