NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017204

3300017204: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 599 ?mol photons light - Symbiodinium sp. Mp (MMETSP1123)



Overview

Basic Information
IMG/M Taxon OID3300017204 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212023 | Ga0186311
Sample NameMetatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 599 ?mol photons light - Symbiodinium sp. Mp (MMETSP1123)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size31102934
Sequencing Scaffolds24
Novel Protein Genes28
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium10
All Organisms → cellular organisms → Eukaryota → Sar3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP25921
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium natans1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium pilosum2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium andersonii1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationPacific Ocean
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000085Metagenome / Metatranscriptome2467Y
F000241Metagenome / Metatranscriptome1481Y
F000665Metagenome / Metatranscriptome949Y
F001154Metatranscriptome763Y
F001767Metagenome / Metatranscriptome638Y
F003025Metagenome / Metatranscriptome512Y
F003026Metagenome / Metatranscriptome512Y
F004725Metagenome / Metatranscriptome426Y
F033310Metatranscriptome177Y
F041581Metagenome / Metatranscriptome159Y
F043414Metagenome / Metatranscriptome156Y
F048097Metatranscriptome148Y
F054545Metatranscriptome139Y
F054880Metatranscriptome139Y
F058692Metagenome / Metatranscriptome134N
F067800Metagenome / Metatranscriptome125Y
F068485Metatranscriptome124Y
F071919Metatranscriptome121Y
F076115Metatranscriptome118Y
F083686Metagenome / Metatranscriptome112Y
F085123Metatranscriptome111Y
F086592Metagenome / Metatranscriptome110Y
F097454Metatranscriptome104Y
F098651Metagenome / Metatranscriptome103N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186311_100153All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium3014Open in IMG/M
Ga0186311_102624All Organisms → cellular organisms → Eukaryota → Sar1636Open in IMG/M
Ga0186311_103203All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP25921535Open in IMG/M
Ga0186311_107315All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium1085Open in IMG/M
Ga0186311_107832All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1046Open in IMG/M
Ga0186311_109342All Organisms → cellular organisms → Eukaryota → Sar948Open in IMG/M
Ga0186311_109928All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium natans912Open in IMG/M
Ga0186311_113147All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae757Open in IMG/M
Ga0186311_114086All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium pilosum720Open in IMG/M
Ga0186311_115141All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium681Open in IMG/M
Ga0186311_115436All Organisms → cellular organisms → Eukaryota → Sar671Open in IMG/M
Ga0186311_115498All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium pilosum668Open in IMG/M
Ga0186311_116785All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Suessiaceae → Polarella → Polarella glacialis625Open in IMG/M
Ga0186311_117676All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium597Open in IMG/M
Ga0186311_117940All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium andersonii589Open in IMG/M
Ga0186311_118878All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae561Open in IMG/M
Ga0186311_119481All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium545Open in IMG/M
Ga0186311_119532All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium544Open in IMG/M
Ga0186311_119554All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium543Open in IMG/M
Ga0186311_119680All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium540Open in IMG/M
Ga0186311_119896All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium534Open in IMG/M
Ga0186311_120753All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium512Open in IMG/M
Ga0186311_121005All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales506Open in IMG/M
Ga0186311_121261All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186311_100153Ga0186311_1001531F097454CTQDHELSRHRAAQQVVFMPGWSAFAESAEAAVGVQSLGLVWPGTEPKASQGLEKIGFKRICEAVGAPTPPFTVLSEEDAPLVDLTDPEAKEACVQDFMKKVLDMNFSEKGLIKSIHGGGGKGTAHLHHPDQPDDVRRAVEKVITEMNRTDGIYFEQRVNTKGDGRFYQIELEVDGGTVADGGRFVWFNSGLQKVVEIGLSDDKIDLFMPQDLYQKSRKWAGDIAKMGNNNTRATMEALVFKNEKXXXXRRV
Ga0186311_102624Ga0186311_1026241F001767MATNAPLLPKQKQPHSKASIFYGADEYLEELKKKYAHDHEIAAMKNLLPGEGDPNAAGVGESKDKMLKVEKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMMYMWNVLTAIFVGQCLMIVAYAAALASFPEHWWTCTLCFGIPFSYLAIQNIYIDHDVMHGATFPVYEFQRFLTHPFADFISLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPMGPNWYKYLLTVPWIPVIHFFGLNDTGGLFALEWWMHFPDEGAGGKCNKEFWSKWVPRRVKHNSFVLCLWACVWLLGTYPLGRPLSEGWRFMFTVSVFARIGFSAAWMFITNFTHSLPWNEFLAQDPGRTWPVLHAVMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWKPNGDEETQMQKTQKKRSLMMKQGHK
Ga0186311_103203Ga0186311_1032031F043414EEEGGCSPWTMAKAMKTMKAKKPVRKVITSKAIKSTKAAPAAVGNFKIRIGIIHGKVFDPIKVGTHDRQYPEHLKIKNNTGPNADGWGGQFMADVSTGLKIMRLHPDIFHVDFMTMEQVTEKRLARNHLTFNFWGDMSIALMNEKPKLARRLQKIQSNPNTRHHPAWDYYEWILHKSRYMKACERQGIPMIDTIHVEKGFNAREVLKKIVAKGWDKFFVKPAYMSFFGAGVINGKTQDFIDNIEPLLQYEAENKHQKEFLVQPYMLKPNGNVFDEIRNFFVDGEWAYSVYTDGVDYEGFWEQPAGKLKEACKALAIRTMEEVKKVHKWEGKRINSLLNRIDIGVIPDKSKKLGYHIFVNEIEPQMTTWLGRYCPFVIQDRMAEVCVKQASEMLKRSLAAKRKMPSPQKVRQLLAVLDERLAK
Ga0186311_107315Ga0186311_1073151F083686IRFSRTTIRYCETMAAYHAQQLETLVACGCNCFSSVGMLLFNKLAVQAFPLECSLVAMQLLFAAVAMLIFGFPYLHIGSFRDFLRWCIVVPCFCGMLLTSILALKSAPMSLVIVLRSAAPLCALVIERFYPEPLRISQSMIFSIVLMMAGAVMYVSQLHSDHWEGIGWVLLNSVVAVCDRLLQRLLLSKDQQPVDISKTGITVINNLVGLIPVALAAYVKGEVAQLPGAYAALSTMDTVYIGLSCVIGLSIGYTGIWAQSLISATSFLVMINANKFVIIGIEAFGMHSKVLTTAQLLGACLSILGGIWYGKARQQMEQEEEERKQLIAPKMV
Ga0186311_107832Ga0186311_1078321F083686ILLLLVKRDRTLRFTNMTQSEHMQIVVASSCYCFASVGMLLFNKFAVQDFPLECVLVWMQLFFAATCLAVFAFPYIHVGSSRDLLRWCMVVPFYCGMLLTSILALKTAPMSLVIVLRNTSPLGTLMIERFYPEPLRISAGMLGSILLMMFGGLMYVSQLPHENWQGIGWVFLNSAIAVVDRLLQRLLLSKDQHPVDISKTGITLINNLVGLLPVGLAAYVKGEIAQFPGVWAKLSTADKLYIGMTCVIGLTISYTSIWAQSLISATSFLVMINANKFIIIGIEAFGMHSKALNSIQIVGASLTILGGVCYGKSRQAIEQEVEERKSLLPSKA
Ga0186311_109342Ga0186311_1093421F058692MDHPGGSAGYVRKEGSSFTPGQRKRLNVVAITINILAPWLVFCGIFTALSFQLHYRSPTLAWCTALAGLALSAVXXXAVSAFLAHRTRMREQDPTWCTFAAMAYFLATALAATLGDMNYWYHMQPFYDIENINSYPDVSPARERGQQLMDAGRVYFEDGTALDTSKSMSFKNLDRYCVAPITSGDAPLSSYDFWAVGVNCCGGAKGEFRCGEYTNPRARAGLRLMRDDQRPFFRLAVQQAEAAYNIKATHPLFFYWMQDPVAETMSYKASGLSHALAAVAAHFVFNVLCVAGAALAFSRL
Ga0186311_109928Ga0186311_1099281F048097WLKIQAAVEGTVLFHLKVEAMAHGNLSDLVFLALLAISVQLLAFPGTLFEDLGPLKAQFKTKSSDLDAILKFAGVLILFMGMTFSAVSWNPINGKMAGFGAFITMGYTVYSSFTADGAFIPRALYAYALVILVGALHIFLFPSNPLPPKTPEVKNNHGNFSDVVALCLIGASLTGYFYPEHLFQEIGPLRAQFSVKSDDLMTMIKFVSGLMLIMALMLSGVKWNPINGKLSGLGGFIAAGYTAYSTYVADSEVFVPKLFYAYAAVLFLGALHIFAFPSNPSLPKPAKKKE
Ga0186311_111972Ga0186311_1119721F000085ASSRLKPSRRSPPSIRELASSLSSVIMVREHFRWLAALLIVDIAAAQNWPGCQEQNTVIRNAGQALFTNLQGYGAVIGCFLDDCMSSDKFVANEIESCAKVCFSLPECTHWVWGTEEGEQKCWFRTGDAGREAGEGWISGAKTCHPPGTTVLPLGNSECWAEGFGYENCCEAKFGPNGNAQCWDGVYNYDRCCFPKEEL
Ga0186311_113147Ga0186311_1131471F098651MPAGRTKASRKHLTEYQGWPKGIYPMSDGWVPPCYPKEEELLEYEDRMKARKKATLVKRHLCIKEPQLQQLSKKNFARKGEYSMLAYAIADGEYSGEGDDRSYFVIVFYEPGKKTKVERAFKSVDAALADYEQVVVDPDSKMEQEEKFMYAHGAGDPGECILGEYEYQVLPKGSPEYDDPWGPTHPEGRFWE
Ga0186311_113642Ga0186311_1136421F000241KRFTQVATWLLGFLNRIALAMARPTLLPAVAALAAVYSIASFCFVGVAQTPRDCSRVPARVSAEYLERCGPKDSDVPFDAMQASGPGASVEFKKRPFGILRYQPGQGMKGAMAMEIIPKSRYPGDPQGQAFAAGIQSGWVVQSINGQNVQGEDFGKIMDMLDDEVADPRFSKSTALALEKQGGRMAEPVEPPMTVVFSSIPGYVYKGAALTEDGQDGFAR
Ga0186311_114086Ga0186311_1140861F003025CNKEFWSKWVPRRVKHNAFVLSLWACIWLLGTYPLGRPLSEGWRFMFTVSFFARLGFSAAWMFITNFTHSLPWNEFLAQDPARTWPVLHNVMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWMPNGDEETQMQKTQKKRSLMMKQGK
Ga0186311_114169Ga0186311_1141691F000241MAGMRRALLPLAALLLAVYNLASFCFVGVAQTPRDCSRVPARVSAEYLERCGPKDSDVPFDAMQASGPGASVEFKKRPFGILRYQPGQGMKGAMAMEIIPKSRYPGDPQGQAFAAGIQSGWVVQSINGQNVQGEDFGKIMDMLDDEVADPRFSKSTALALEKQGGRMAEPVEPPMTVVFSSIPGYVYKGAALTEDGQDGFAR
Ga0186311_115055Ga0186311_1150552F000085HAAQAGVPGGQMARAVRLLGLAWCGVAGQDWPACQEQNIVIRNAGRALFTNLQGFGATVGCFQDDCQNTDKFVASSMDSCTKVCQSLPECEFWVWGQEEGEQKCWFRLGDDGREAGEGWISGGRACHPPGQQAIVMGNVECWIDGFNYDTCCDPKFGPSGNAQCWDGVFNYDRCCFPKDE
Ga0186311_115141Ga0186311_1151411F033310EMVARHGFSFRENPVGIGRNVSQPPSWSENKNAKGRKEYDLYNCSSLEAFEMRFTEQGYPMRSFVRCYRVSWFITNGWYSPALKNRMRELNKWPPPEKYTKSDWLSWTQADAEVNRAILGYCQFMRQQLKDTMDSNTAEDFRHSTDPVDRVLWHMRSEESRTFKNCVSVAKKIRT
Ga0186311_115436Ga0186311_1154361F054880IDGSRDGAPTFFEVPLSSTKHFISVYSPTDSASYTLTILADIGAWPRPGSNGRLAARQLSELQVQISWDAAGFIPEGVTEVKQYWVYSSMLVEWDNRTNMAVFLRSNKTMNTVCGLQNNTDRPYTTVPASECSNGKCNVTIGGVITDKRYVFNIVAESERGHRMAYAGLIMRTDWEVVRQAASERTLRVVGAVSGSVLGMVIIIYFLMLKLYG
Ga0186311_115498Ga0186311_1154981F001154MVKVTVGKPEDPWCEIDLTEEDVEDWKKGVDIAEEKLKEVIQLPPITLDNCHEREDGDLQWDEITFEEEVNGKYWHAVIMSLHRIREDFVKKQRKMKHLDWYMTMKKTSDKRNAKYYV
Ga0186311_116785Ga0186311_1167851F054545GHAMRQCFPEPVEVPLGDPVSKVRAGWQCTAYITESARPIICGGVRAEGPSVADMQQAGEDGEGVAPEMRGGYKGGGPQPEAGVMDMVSTTGVEVMTEVVTEASVGEAHGVLVCYDGTLRGWGYNRQKQAIGDETDDTFVKPQAVDDVPFDIYKGLSVAVGGAQSYAIMQQRHP
Ga0186311_117676Ga0186311_1176761F000665RFHGMEESLGAVYYNFPHAGAVSGFFDGHPCVNWRHENLMRLFFRALRSFMKPGGLVKVSSSKGAVGVRCFYITEAATENEFVHIETMPFLEWHLHRYGRSYGDKRDVYRRPGQGEGYNVQRAEADMVYTFRYAPTGAVLPPQSIRMPPKFSVLKSCPDGPFRMLIGDARERHATALYKRFVTECSGTHVG
Ga0186311_117940Ga0186311_1179401F076115LCGRLGCDARVGLTKKDVHKLFEKAPQSVWEEVYRSINPLAQMVKKGAERLPDTFLERPITEFLFEDEDQFAKVHVELNAHLYYGAAEAITADHVQSYFGKQRMELHIVAPGSYGAQDLYLWKMVITPLSGEIVPEDSTLELKATTGRFGSQKLTLKLMKSKKKRWYKVGQAVTGQRI
Ga0186311_118878Ga0186311_1188781F071919MEKEEKVQQYKTIKRMQKTFLVRCNESLTHIIPGNGVKPASAIRRIEQQLKDERHRLGKLNQEELMAQMDVTSQKKVKNAQELAAKKAELIEHIKQLEKQLLQYELL
Ga0186311_119481Ga0186311_1194811F004725LKVVWAHCVFQGSCQALVVMVSRAPLLATEGKTGHSKASIFYGADEYLEELKRKYEHDHEIAALKNALPGESDPNAAGVGQSQAKILSVEKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFTCQCLMVLGYCAALACFPEYWWTCTLCFGLPFSYIAIQNI
Ga0186311_119532Ga0186311_1195321F085123SQYRRFRDKMDADTVEALQDHYREARKDERRCSDKHRSDVASVLKSLVEGSVHVNHRTSCGLLVDVAALRKRSSTDGFVHVDLDSNVTFVRSLDHDDPATAGIVIEGAVALRRRILQKQGLRLVTVRESEWRDLDESKEKRRHLRNLLSALGDVLE
Ga0186311_119554Ga0186311_1195541F004725VLLLIFPLLAMATSAPLLAKEGKGHSKASIFYGADEYLEELKRKYEHDHEIAALKNALPGESDPNAAGVGQSQAKILSVEKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFTCQCLMVVGYCAALACFPEYWWTCTLCFGIPFSYIAIQNIY
Ga0186311_119680Ga0186311_1196801F003026GFSAAWMFITNFTHSLPWNEFLAQDPARTWPVLHNVMALVLGGKHRWNEMLFHDVHHAFPNAVGTLSQRGRFHGWEKVHDAAAEVLHRGLWMPNGDEETQMQKTQKKRSLMMKQGK
Ga0186311_119896Ga0186311_1198961F086592AYYDRGPLSRPRSKMSEEFAVVRSIIEDKLHQEFYNVPTKDLPPRMQPRQLPNLQDAMKIDWDDWKSWEWMQPGWKGVKMHSQCVINADGSAEIRSVWK
Ga0186311_120753Ga0186311_1207531F041581YASVFVQDEDAQDEEMEIRRMHELVEQTTQVLQQARNELIALNQRQRSDSSTTNTEAKAKKKETAACKHIDQLLWKAEVDLENVEDMYLRHIDNQKDTYSLADFNQRVSRTFSDLEESLNTQLDSFKSYFFR
Ga0186311_121005Ga0186311_1210051F067800SSGSSPAAPCPVPSPAMDKVMPVVGGLAGLWVASKVVPIMYRWELIPGVGSEEWWARAKTIRYDHYTEGIVYSPYDTGEPIREMPEECKGKMLLRQRRGGWKLQSEMEQE
Ga0186311_121261Ga0186311_1212611F068485AATVKHGDQAHESPSEGWVPQAVAKRVSLCRVAADWPEEGAGTLGLFKGDLIAVSKEAERGWVYGERISPDRSDAATDGWLPKKVLEYILV
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