Sample 3300017226

Basic Information
IMG/M Taxon OID	3300017226 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128947 \| Gp0212022 \| Ga0186310
Sample Name	Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 624 ?mol photons light - Symbiodinium sp. Mp (MMETSP1125)
Sequencing Status	Permanent Draft
Sequencing Center	National Center for Genome Resources
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0128947 | Gp0212022 | Ga0186310

Sample Name

Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 624 ?mol photons light - Symbiodinium sp. Mp (MMETSP1125)

Sequencing Status

Permanent Draft

Sequencing Center

National Center for Genome Resources

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	44479157
Sequencing Scaffolds	18
Novel Protein Genes	19
Associated Families	17

Dataset Contents

Total Genome Size

44479157

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	7
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium natans	1
All Organisms → cellular organisms → Eukaryota → Sar	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium natans

All Organisms → cellular organisms → Eukaryota → Sar

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales

Ecosystem Assignment (GOLD)
Name	The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Ecosystem Assignment (GOLD)

Name

The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Pacific Ocean
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Pacific Ocean

Coordinates

Lat. (^o)

N/A

Long. (^o)

N/A

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000241	Metagenome / Metatranscriptome	1481	Y
F001154	Metatranscriptome	763	Y
F013530	Metagenome / Metatranscriptome	270	Y
F016002	Metatranscriptome	250	Y
F022654	Metatranscriptome	213	Y
F034936	Metagenome / Metatranscriptome	173	Y
F036711	Metagenome / Metatranscriptome	169	Y
F039474	Metatranscriptome	163	Y
F043414	Metagenome / Metatranscriptome	156	Y
F048097	Metatranscriptome	148	Y
F062433	Metatranscriptome	130	Y
F064392	Metatranscriptome	128	Y
F067800	Metagenome / Metatranscriptome	125	Y
F071919	Metatranscriptome	121	Y
F074901	Metatranscriptome	119	N
F083686	Metagenome / Metatranscriptome	112	Y
F096614	Metatranscriptome	104	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0186310_107456	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2592	1535	Open in IMG/M
Ga0186310_108383	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1464	Open in IMG/M
Ga0186310_113923	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	1139	Open in IMG/M
Ga0186310_117588	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → unclassified Symbiodinium → Symbiodinium sp. CCMP2456	969	Open in IMG/M
Ga0186310_118055	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	947	Open in IMG/M
Ga0186310_118292	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	937	Open in IMG/M
Ga0186310_118688	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	920	Open in IMG/M
Ga0186310_118968	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium natans	908	Open in IMG/M
Ga0186310_119782	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	873	Open in IMG/M
Ga0186310_121479	All Organisms → cellular organisms → Eukaryota → Sar	807	Open in IMG/M
Ga0186310_123860	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus	718	Open in IMG/M
Ga0186310_124542	All Organisms → cellular organisms → Eukaryota → Sar	694	Open in IMG/M
Ga0186310_125733	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	651	Open in IMG/M
Ga0186310_127192	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	601	Open in IMG/M
Ga0186310_127679	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	585	Open in IMG/M
Ga0186310_127902	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	578	Open in IMG/M
Ga0186310_128794	All Organisms → cellular organisms → Eukaryota → Sar	550	Open in IMG/M
Ga0186310_129389	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	531	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186310_107456	Ga0186310_1074561	F043414	AVLEEEEGGCSPWTMAKAMKTMKAKKPVRKVITSKAIKSTKAAPAAVGNFKIRIGIIHGKVFDPIKVGTHDRQYPEHLKIKNNTGPNADGWGGQFMADVSTGLKIMRLHPDIFHVDFMTMEQVTEKRLARNHLTFNFWGDMSIALMNEKPKLARRLQKIQSNPNTRHHPAWDYYEWILHKSRYMKACERQGIPMIDTIHVEKGFNAREVLKKIVAKGWDKFFVKPAYMSFFGAGVINGKTQDFIDNIEPLLQYEAENKHQKEFLVQPYMLKPNGNVFDEIRNFFVDGEWAYSVYTDGVDYEGFWEQPAGKLKEACKALAIRTMEEVKKVHKWEGKRINSLLNRIDIGVIPDKSKKLGYHIFVNEIEPQMTTWLGRYCPFVIQDRMAEVCVKQASEMLKRSLAAKRKMPSPQKVRQLLAVLDERLAK
Ga0186310_108383	Ga0186310_1083832	F064392	QKRADLGLGLLPRRMAEPDDPLIVNVVGRHKERENQDLQGEYHMIGMVHGRPAYRKPGTRTVIRYWPVADRWLIDREGVQESDICNAYAEQGGARHPAVEELVWRVWESQHRQHVRDPEFLVTASPNTIQVLGRAAGKENWALNGEYKLIGLHQGKVAYQKAGKFKHAIRYWRVGDRWLIDLEGLRDVDICNAYADAQSTSYPGEIRLQWHIWDSTRQRHVLDSSLCTLVTPSVIEVVGRESPKENTAMNGSYHLVGLHAGQPAYMKADGSGHAIRYWPREERWLIDLDGLRDTEICNAYAEAGGTGAHMHPGHLNLVWHVWETSRGRHLTDPAVRSFVAPHFVRISGRDPYKENSTINGDYELVKIVEGKPAYKKADQDHVIRFWPAEERWIIDLEAGFHGGDVANSFADAKGADHPGNSELLFYVWETSRGRHVPDEDVIADAIWLPPVDWSKVPGVSD
Ga0186310_113923	Ga0186310_1139231	F083686	LIRFSRTTIRYCETMAAYHAQQLETLVACGCNCFSSVGMLLFNKLAVQAFPLECSLVAMQLLFAAVAMLIFGFPYLHIGSFRDFLRWCIVVPCFCGMLLTSILALKSAPMSLVIVLRSAAPLCALVIERFYPEPLRISQSMIFSIVLMMAGAVMYVSQLHSDHWEGIGWVLLNSVVAVCDRLLQRLLLSKDQQPVDISKTGITVINNLVGLIPVALAAYVKGEVAQLPGAYAALSTMDTVYIGLSCVIGLSIGYTGIWAQSLISATSFLVMINANKFVIIGIEAFGMHSKVLTTAQLLGACLSILGGIWYGKARQQMEQEEEERKQLIAPKMV
Ga0186310_117588	Ga0186310_1175881	F016002	MSLLTPRLDWILGCCTAGGCESHAQTEFQVQLSSEPAPAHSAKHLLTSGDSFDITFTPRLFASHGFSRASNAPITPRQHDLKAQLDLPSLQTYPLPPNLSADDGEEVRKEKLLEMYREFALDLHTGMYLTQLTSNRDYADIHVQLMEDLTTLKLDQSNGRIIEFPLTNVSKVYRIVKNDDKWYAAGTPLPHASPNAEQIVVVEFMRRKLAFVFKELQVSQRFLICMELLIRRAQQKQALRSLTPTFPPHHSQSRQCPTPRVVQEAMTRPIPTPSENGANAK
Ga0186310_118055	Ga0186310_1180551	F074901	PVGLRQKTLRRSCVLLLIFPLLAMATSAPLLAKEGKGHSKASIFYGADEYLEELKRKYEHDHEIAALKNALPGESDPNAAGVGQSQAKILSVEKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFTCQCLMVVGYCAALACFPEYWWTCTLCFGIPFSYIAIQNIYIDHDVMHGATFPVYDFQRYLTHPFADFISLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGANWYKYLLTAPWIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWVPRR
Ga0186310_118292	Ga0186310_1182921	F074901	LKVVWAHCVFQGSCQALVVMVSRAPLLATEGKTGHSKASIFYGADEYLEELKRKYEHDHEIAALKNALPGESDPNAAGVGQSQAKILSVEKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFTCQCLMVLGYCAALACFPEYWWTCTLCFGLPFSYIAIQNIYIDHDVMHGATFPVYDFQRYLTHPFADFISLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGANWYKYLLTAPWIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWVPRR
Ga0186310_118688	Ga0186310_1186881	F074901	HSGGVWCFLFLPLAMATSAPLLAKEGKGHSKASIFYGADEYLEELKRKYEHDHEIAALKNALPGESDPNAAGVGQSQAKILSVEKNNENRSLKTNRLFPTPNKPDPMPQNLAFLFTKITPEQMIYMWNVLTAIFTCQCLMVLGYCAALACFPEYWWTCTLCFGLPFSYIAIQNIYIDHDVMHGATFPVYDFQRYLTHPFADFISLPWEEFVLEHNRHHASTVDLLIQGEFGWDPEEFHYALQQWAGPWGANWYKYLLTAPWIPVIHFFGLNDTGSLFALEWWMHFPDEGAGGKCNKEFWSKWVPRR
Ga0186310_118968	Ga0186310_1189681	F048097	LKIQAAVEGTVLFHLKVEAMAHGNLSDLVFLALLAISVQLLAFPGTLFEDLGPLKAQFKTKSSDLDAILKFAGVLILFMGMTFSAVSWNPINGKMAGFGAFITMGYTVYSSFTADGAFIPRALYAYALVILVGALHIFLFPSNPLPPKTPEVKNNHGNFSDVVALCLIGASLTGYFYPEHLFQEIGPLRAQFSVKSDDLMTMIKFVSGLMLIMALMLSGVKWNPINGKLSGLGGFIAAGYTAYSTYVADSEVFVPKLFYAYAAVLFLGALHIFAFPSNPSLPKPAKKKE
Ga0186310_119782	Ga0186310_1197822	F096614	VLKAMRALGEGRSFFSEGMLQSIADLLFNVLSYLRAPSLSKLLYSSHEAELWVRMYLPALVDKRGWGNPDLSANPLSTLHLSEMWDVLANVCSPIGVHFMLLRHTFYGTMLELQLSPGSTLAHFNFRASDEAAPMWCRGSFAVRGALQCGKWTDELRQRPRGAPITQASLAQQSSYRVEHCGDRFVLRPACKRWTEARPQLQLTNRGFIAIAAEGGGIIVEDGQPARRIEADAPEAPC
Ga0186310_121479	Ga0186310_1214791	F022654	LAMSDLTEDLDRAETCPSCLAKGGGWCSTSQRCVEDDTAYCEAESLIGLAGFTDDCGMDEEGQKPKVRPWIDKGVLVSYTFENGSCCMGQGIVHRAYHVLEEYTVLLRDGSREEVKTERWNHRKPAKKKDENSEYHNIEFRYFSPRELTVLSGVRSGDLVEAHFAVKQKGEAQHELIKSRRTELAVVINTTVTNIAVNFTTDHIVSILPRDFIVDVTNQTLGPGHARHTEL
Ga0186310_123302	Ga0186310_1233021	F000241	LKRFTQVATWLLGFLNRIALAMARPTLLPAVAALAAVYSIASFCFVGVAQTPRDCSRVPARVSAEYLERCGPKDSDVPFDAMQASGPGASVEFKKRPFGILRYQPGQGMKGAMAMEIIPKSRYPGDPQGQAFAAGIQSGWVVQSINGQNVQGEDFGKIMDMLDDEVADPRFSKSTALALEKQGGRMAEPVEPPMTVVFSSIPGYVYKGAALTEDGQDGFAR
Ga0186310_123860	Ga0186310_1238601	F062433	AEELLGRAAEEFQALLTLVANLRQAAEGARPESLGPDRAKPVPKPPFCWQPSQEYEKEFQVTGEHNEFVTKVGDFEDQGWVIPVGGSWRLTRGGIYRWTIRIERKCTSRPQLQLGIHGANHNQPWRLVTTSRCSWSRDDEPWQDRPGGDRLIEEGSYVHMEVDMRGVSSKTGTFAMAINDEPFEQLFDDIPLGQPYALIPVVSMGGNQSQIRLCPNY
Ga0186310_124542	Ga0186310_1245421	F039474	RSLQPQLAQSTFASAVSLAFPGAMLTSVRRIALRRSLGVRAVAGHGQPMRRQSFGFGDPFPPNAPGVGGEHQLYPPETMANTAKYITENMTNVPKYKEIIEGIGYPGQKHSAGGLCTLGRIYYGPGRYDYGRPKMPKGWLANYFYPIWEFGHIFFVCDRWIAWRLLRHILALTICYIPFNIQMHWNKEMIEDYKKHHEW
Ga0186310_125733	Ga0186310_1257331	F034936	LVPHEGRASNPFFRQASIANMQKSQSEGSLAFLKNSKVGSATGFMLVSGGIMAIPHGKKSKGLLDFAARFTAVSEYQEKFREIPHCYASMDRKPLAPYNPNATRSRLALEDAPVPLKNASTIEFRDKFCVHKRRFVTTHKNYYTGERPDMRSNPGMIADSTRLKKKLQDM
Ga0186310_127192	Ga0186310_1271921	F001154	RLKLFSHFRAAPGRGPFTDGMVKVTVGKPEDPWCEIDLTEEDVEDWKKGVDIAEEKLKEVIQLPPITLDNCHEREDGDLQWDEITFEEEVNGKYWHAVIMSLHRIREDFVKKQRKMKHLDWYMTMKKTSDKRNAKYYV
Ga0186310_127679	Ga0186310_1276791	F071919	SSCLLLRPVTTRGVRMEKEEKVQQYKTIKRMQKTFLVRCNESLTHIIPGNGVKPASAIRRIEQQLKDERHRLGKLNQEELMAQMDVTSQKKVKNAQELAAKKAELIEHIKQLEKQLLQYELL
Ga0186310_127902	Ga0186310_1279021	F036711	MPVWQNINLKQKAVFEIIQAPHARELPYYLKDDELDFFIKGIAWGPHKDTYLPRLVERHKRPIYIARGYAPPTYSRLVMVRFYGPDPLLQGHAGWDAGEEGEIMEYILGWRWLYADWPGPLVDEVEEAWKTQWWPQMSRPDWTWEGLRFCVPPYFVAEEGRPWR
Ga0186310_128794	Ga0186310_1287941	F013530	ATVMSEEMSIKSKTIRRLEVGEVLEALEGPIVEEATKVKRLRCLATQDDCSGWVTLAGNQGTAFLEAGGNFYTCVKETLITDALCVQESKTIRRLAKGEVVEVLEFQKKDATADVRRIKGKAKQDGAVGWITIASNAGTAFLEPC
Ga0186310_129389	Ga0186310_1293892	F067800	DCLGSSGSSPAAPCPVPSPAMDKVMPVVGGLAGLWVASKVVPIMYRWELIPGVGSEEWWARAKTIRYDHYTEGIVYSPYDTGEPIREMPEECKGKMLLRQRRGGWKLQSEMEQE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300017226: Metatranscriptome of marine eukaryotic communities from Pacific Ocean in f/2 medium with seawater, no Na2SiO3, 25 C, 34 psu salinity and 624 ?mol photons light - Symbiodinium sp. Mp (MMETSP1125)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences