NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017230

3300017230: Metatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, at 24 C, 35 psu salinity and 714 ?mol photons light - Chroomonas cf. mesostigmatica CCMP 1168 (MMETSP0047_2)



Overview

Basic Information
IMG/M Taxon OID3300017230 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211876 | Ga0186164
Sample NameMetatranscriptome of marine eukaryotic communities from unknown location in f/2 medium with seawater, at 24 C, 35 psu salinity and 714 ?mol photons light - Chroomonas cf. mesostigmatica CCMP 1168 (MMETSP0047_2)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size39037015
Sequencing Scaffolds10
Novel Protein Genes10
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Cryptophyceae4
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia australis1
All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP27123

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011850Metagenome / Metatranscriptome286Y
F019282Metagenome / Metatranscriptome230Y
F019841Metagenome / Metatranscriptome227Y
F020015Metagenome / Metatranscriptome226N
F026478Metagenome / Metatranscriptome197Y
F036560Metagenome / Metatranscriptome169N
F087277Metagenome / Metatranscriptome110N
F101267Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186164_107532All Organisms → cellular organisms → Eukaryota → Cryptophyceae1298Open in IMG/M
Ga0186164_110949All Organisms → cellular organisms → Eukaryota → Cryptophyceae1036Open in IMG/M
Ga0186164_112157All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales965Open in IMG/M
Ga0186164_112719All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia australis933Open in IMG/M
Ga0186164_113645All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales882Open in IMG/M
Ga0186164_114763All Organisms → cellular organisms → Eukaryota → Cryptophyceae827Open in IMG/M
Ga0186164_118117All Organisms → cellular organisms → Eukaryota → Cryptophyceae693Open in IMG/M
Ga0186164_122598All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712554Open in IMG/M
Ga0186164_123667All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712527Open in IMG/M
Ga0186164_124326All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Pyrenomonadales → Geminigeraceae → Guillardia → Guillardia theta → Guillardia theta CCMP2712511Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186164_107532Ga0186164_1075322F020015FFRALAPMQDTYAAVRPPAAPQRRLWAARAVAGGIALVAAVCVGMLVRERLAGEGGEEELGGQYYAVAAPPAFNFNRFIKHTWVYDGRASDPDMTTFIEHLARKHHYKLQIHHLTTFRDNEFRASLFSENIHCIVFPPLIHFPGVSELAKKDLRGYVSAGNNVVFIGSYNWLSVMNDVFGFQLMSDYKDGPYYRNDRNVRGTPFQWSMARLDQPDGSVYGVKVDSIPLDGMCMFDTMGSCVVFYIKYNLGTVVYIAFDYDTPYGIDHWDQILHAGMMM
Ga0186164_110949Ga0186164_1109491F087277MTCPEEGQQRIPAEQRRRARLAFSVVCATALVLAAVVCVLSTGSEGSQGPISGGEQWLEDGRASVNMFRVARSPMQKAELRGPPLPRQVHYYSNVGDRLPVLGDEERETRQTFQELVQLGHTCVVMLRRAIWSVDPTVFQPQYNLQVHLDAVHTALQQLAAQTGVYLTNPPVVHVDETIFDEAANDVSRFRKLVERIPEMHNAQFYWVVQYNVIRTELRKTSAELTEVVNIAKHHFLEVADSIDSMRLNVEAIHD
Ga0186164_112157Ga0186164_1121571F036560LVLTARLRSSFRGMIEQLYGKHAAALYAQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRARRQWDYFYRRK
Ga0186164_112719Ga0186164_1127191F011850VGLAVGAEALAPTPMVGGAKLALRTSSTRSVATVGPKMAMDVNAIVEGAQYLTAAVPNVPFVDEITGEPQGLTAPIVHFGSVISLWLLFALPVWSAAYKAAGADTAEWVGVSQVTEDAPGIGLYGKYAPEYDGPTFREGLEYVLSFAWKPPILIAWKPRADLDRAMMDPARDTVVSSLYKSFGGALDKTAVYDEEDQLLILSDMETFPETELGRRRTAQAEAAGWFTGNPSFGKSLIEYSEETKKGMREPGTVSISAKELAALRAEAAKK
Ga0186164_113645Ga0186164_1136451F036560GKSTAMVFETLYGKHAAALYAQAADFNKTARFYYMKAQDAYYLANAQASYDDWRRARRQWDYFYRRK
Ga0186164_114763Ga0186164_1147631F026478ESSGDQTTMGKLLLAGACLFAVVTLAAAGKPKRKQVSITDEEVVKARDFALAEIVKLSDSYRDMKINKVISAETARSAFADGTNYFLKMELECTSVCAAPLSPASTCRRGHYKGVNEIIVFEKDDGHYDGIAIDEFPQMDGEYHPCTPSYKGPEKCNPAEHRTPEQAALFLDDDEPSGTKTEL
Ga0186164_118117Ga0186164_1181171F101267RHLKFAKMGCCSSRPPGSHEWQSQVPGSYKQNPVPVVNNKKDIPPDFFVKCYMKGWLKTLPKKQRIWCMVHENNFYFMDSDEDTEPRKFFCFDGCLVNLKGKELEIQTAELMGGSVPRATYKFMADDEEGALEWYEASLKASSRRN
Ga0186164_122598Ga0186164_1225981F019841MFSVLESVAFDTGYAGSSGTVPQKWVNGNGTSYIYFGSGQFDGQGSGHDYYGTLFMPPTGSVNNCDGGRAHTYCDYRQQ
Ga0186164_123667Ga0186164_1236671F019841RAPAIEKNMFQCLATVQYRSVDFDTGYAGSSGTVPQKWVNGNGTSYIYFGSGQFDGQGSGHDYYGTLFMPPTGSVNNCDGGRSHTYCDYRQQ
Ga0186164_124326Ga0186164_1243261F019282MFALLQMLDVSDVNTINTWAEPHNANGVTPNTVIDSNDEPPKNNQQRMAARGY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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