Basic Information | |
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IMG/M Taxon OID | 3300017268 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0211811 | Ga0186099 |
Sample Name | Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, at 15 C, 32 psu salinity and 608 ?mol photons light - Prymnesium polylepis CCMP 1757 (MMETSP0143) |
Sequencing Status | Permanent Draft |
Sequencing Center | National Center for Genome Resources |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 59019327 |
Sequencing Scaffolds | 12 |
Novel Protein Genes | 13 |
Associated Families | 13 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 2 |
All Organisms → Viruses → Predicted Viral | 1 |
Not Available | 1 |
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina | 1 |
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis | 2 |
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi | 1 |
All Organisms → cellular organisms → Eukaryota | 2 |
All Organisms → cellular organisms → Eukaryota → Haptista | 1 |
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae | 1 |
Ecosystem Assignment (GOLD) | |
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Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | marine biome → marine water body → sea water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
Location Information | ||||||||
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Location | ||||||||
Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F013853 | Metagenome / Metatranscriptome | 267 | N |
F022203 | Metatranscriptome | 215 | Y |
F024007 | Metagenome / Metatranscriptome | 207 | Y |
F037016 | Metatranscriptome | 168 | Y |
F043734 | Metagenome / Metatranscriptome | 155 | Y |
F049376 | Metagenome / Metatranscriptome | 146 | Y |
F050807 | Metatranscriptome | 144 | N |
F057909 | Metagenome / Metatranscriptome | 135 | Y |
F069584 | Metagenome / Metatranscriptome | 123 | N |
F071920 | Metagenome / Metatranscriptome | 121 | Y |
F074888 | Metagenome / Metatranscriptome | 119 | Y |
F079481 | Metatranscriptome | 115 | N |
F083576 | Metagenome / Metatranscriptome | 112 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0186099_1004564 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 2055 | Open in IMG/M |
Ga0186099_1004649 | All Organisms → Viruses → Predicted Viral | 2039 | Open in IMG/M |
Ga0186099_1005549 | Not Available | 1885 | Open in IMG/M |
Ga0186099_1010548 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina ericina | 1409 | Open in IMG/M |
Ga0186099_1012300 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis | 1304 | Open in IMG/M |
Ga0186099_1016376 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi | 1108 | Open in IMG/M |
Ga0186099_1017808 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | 1053 | Open in IMG/M |
Ga0186099_1019201 | All Organisms → cellular organisms → Eukaryota | 1001 | Open in IMG/M |
Ga0186099_1019861 | All Organisms → cellular organisms → Eukaryota → Haptista | 979 | Open in IMG/M |
Ga0186099_1023771 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Isochrysidaceae → Chrysotila → Chrysotila carterae | 855 | Open in IMG/M |
Ga0186099_1037138 | All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis | 548 | Open in IMG/M |
Ga0186099_1038412 | All Organisms → cellular organisms → Eukaryota | 525 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0186099_1004564 | Ga0186099_10045641 | F013853 | VPAQVKISQPIADTGSKWDSYSKFRLGGMLSKVPRHIRAAGDPNRLAFTLGYPPFVAVSVGDKYLLTFDTTRVNEDLGLTFPEDYGQIAGFQWLPNLVLLVGLTNGYIVAVDFGALIKLQQSHKLPDRVSAMGTTKVFNEYLQDLSAFYTSATGQRVACCGDTAVKIVHRTGVELEVHLEVALDRKPTIGEFLDKVEWDDRAAAFACSSTDGYLYVHEILD |
Ga0186099_1004649 | Ga0186099_10046492 | F037016 | VIHRRAMSRLLVATAVVLVGVGAVDHRDLHRARTKVPRPPFKGKTPHEMGSNLNAAMRRMFPNTKPCEEWTAEGLQAYQEQLHMHRHEDLDSIYQSSNDNRRMVHASLDDYRTHWTRVNELVRTHGHLAKMHRDGHCHEAVMWLVHHVPVEEQQTRFANQVAPLLPLSAHYGPCGSNATASELEVCNVYEGMRSCAECHSGSGIPMQDYNDPNGYIPEDPKLPGYARQRRCDQNYLPKCGPCEGIGGPYWGDDLKYFQPTNCEVVATPEQVAQADRVLPQFGEQLIVHQLGSDRLARTQNAANFALYSQIRSTLWYDFPLNGTSTGTAVDGMAKLRHDTFYDDLKYKWLDNGLVSEVHLQSRAQRDANVTGPMISLLHGLLGYGKYMGGLTCLADPVGVPVLGGSVVVNGSAHSSFMEGADYKGRVTIGVEYDGFKMGDKGNGDMKAKRNMTVDHYSKWFLHIFMDADKQSPTYGLPVRFYGPYSGFAVYIAINKTQPPAEAWDTACVGEQINGWPSEEHKPLFPCVGKKIKDYPCMVVGKTHKEVCDPWANASAAVNQTMEQMPQFETFKGAFGTVRIPSNLLNTPQV |
Ga0186099_1005549 | Ga0186099_10055491 | F050807 | GARTTPLTHPPLAVQHTEGGKQRLSLGLNKMASGDHALEAGDFITTARAQNEVAITVRGAAKARARLLMKLTPADLGVSSVKAAWQNGGAQIAVASAVDGNCVVSLYGRKGDKLRVHNLGAGPPSWCDWDCAGHCLALMQEGTGLYLWDVGMPEQLAASEGNQPLRLCPSITVATSFCMWSRVHSQLAIGTQGGKVIVFNKKEGVMQLHDRKGKHGAAVTCGDWLFDNRLGLASGTRVKISKPVPEAGAQWESYSKFKLSGMLSRVPRKFKDAGAPKLLSFSLKFPPFVAVCIGDNYMLVFGTSGHHANEDVGLTFPDDYGPITGFQWLEDDVVLVALANGYVTSVDFGAMVRMRQQHGLPECVKATGTTKVFNEYLKCLTYSTASQKIACVGDRGFKVIQRKEEELEVLADISLDYELTLGNCLETIRWDSEGKAVCICATNGYMWTYDILTQ |
Ga0186099_1010548 | Ga0186099_10105482 | F074888 | VLADFALLHAFQQSGQDHTVEAQCMLIQQLFPRLSAKQVAKLQDRRVWGSPWQPGGAFLGAPNICVTAQKAREWQRMFDHAAAYCEAIYGEPVDLDGVRSDTMTCLALESLPLPVYDIMS |
Ga0186099_1012300 | Ga0186099_10123001 | F049376 | SGKWFADITADSDVWLLRHDTKYAHVHFNGTSMPLLTFHVSEIHSQTREQQAANNTGPMVSLIDGIPSFIPGGCTCVADPVGVPDVSHFRTAGLIPGGDDGMEYLGRINLTIAEHTGETVTVDHWANWFFHVFMDIDPTVPWYGKAPRRLASAYAGTATYANWDLRDPKIADPTVWTRGIPTSPERVGPDHGKYCMNPQKVAMCANISQTTFPPKPATQPERTPAPWAAVHASFLPSMSASRAHRTHLLSKAAH |
Ga0186099_1014984 | Ga0186099_10149841 | F083576 | LNRMSMPRGHNATLQLDKLMRLHLAAVLFAGSARGLQLAPTAPALRGTARVAPAVMQLWAGRKRSRYEDDGSRLQGADSISNVDEKLKGGLFSNFKFGTEVEVKGTEVKKGAKKKAAPRGMAPDNSDRGLGGNNAYRNTESARLNGDKSQLIRKAKLEAYINSEEEASDGTFGKIISGSALLSIFGGLVGVYLYYGGDGLLTATSKQRALSVTRQVGVEVCASVDCLPQE |
Ga0186099_1016376 | Ga0186099_10163761 | F022203 | PPITDVRNTTTPTHAPRVNMLYKLVAMAAFLVCTDALKIDANMGRRSVVAKGAALGALAPLAAFAELKKAGDAEIYKRADEGKLNAARVIERAKTGDLVDGSSATCSELDALIAVDRDAIEFEKDKVDARFGNDKAKVQATEDTLQAQVDNLKKIRKNKGCTSAQANLNQASDFEVYKRADEGILNSARVIERAKAGKLVDGSGATCSELERIIIQDKKAVQFEKDKLEAMGSKVDPKDKQIVAEAEKAIEKQLVKLAGLQKAKGCQ |
Ga0186099_1017808 | Ga0186099_10178081 | F079481 | ACGEVLRSSRSCNLPHTMGTAAGFFGITYQGAVNGLASNTLSIFNMDHPDDRAWLKLCFDFVAPGGKLKHDQIVEFLQFFYRHRAEGPTQSGSFLYAYPENEAQFLSSLFSSADAELVFDDMLNNCMEAQANFAEPAAPLEYNSNNVLRTDMVKHTRKMLDPQQQFRKPLLTSQEVGWDLTKDSMPGRPFHLRTSATTQFADAAEKQAWGRSIGGEFSEFATRKLLEFGGFGMGV |
Ga0186099_1019201 | Ga0186099_10192011 | F069584 | MTGPFPDQKMIDDKSLWFGEKPPGPCYIACPCDPLIDASEELGFFEDGTSCTAAAMPCFSSAPPGAPCAKGTGCYCTTFWCCLIATAAGPQAPCLLCYIAKLRQKTMEKAGVPPEGLGKAFMYSLAPGIAVNQISRELALRKMHPRLKTYTGTVTTYKGGSPSVEVMVR |
Ga0186099_1019861 | Ga0186099_10198611 | F024007 | FFFSLSSVSSSSVFTMAKSPAAAPPPEKNDGAIVVALVLLVAALCTAFFGAVALYASADIVLTGEQKQKYVRARRLARLLSGWANVGNAVVHALLIAMLLSDTARYKVFFPDEAEMPIGPVFLLIANAYVGRATLKGGGLQTAFAWNSFVAVAGSLIPIVWPKFLDVGLATWPYLAIFLWLGIWAFESTAFFFSAVAFSLKDAHAIKAV |
Ga0186099_1023771 | Ga0186099_10237711 | F071920 | NSKCPAYWELQAPHVATDFDFDRDIPGYYYELAFHDLTQRPLCPSAPRCITSEKAVMNHSDGVRYVNDTWNLQCFGHPYPQTLLFNQTAANGYLCGYVPTTLIPFLPKSVVAGLVFPDTIVDFKSGPDGWLLEYQCVEAFGSVRFVGINFYSKLKTEAAFEEMYAAAMARGLGLWMNSKPWGLSRVNHTDCPLEPHVRQLV |
Ga0186099_1037138 | Ga0186099_10371381 | F043734 | ARSAPSQMFTFFRAKQLGFPAARWGGAVGVIGFFLLYEDLPQLIMQTQYGVFPGWDGVAREFGLMAKKTEEE |
Ga0186099_1038412 | Ga0186099_10384121 | F057909 | TQKWRERITTEMQFAGRFAKYQEASMTPEQLAEMAKVTAPPERRWTHGPTFLFDLGKEATGGVTPYEMKDARDTWYSKHRVKELQDGQSNTGGTVLSSHAYGDNLKDYHDWTKPEFARQPVIRDNFFRSTGALATLRALARTGRTARILRAASATLLPRFPRARCAAQDDDFLG |
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