NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300017276

3300017276: Metatranscriptome of marine eukaryotic communities from Northern Baffin Bay in L1 medium with seawater and antibiotics, 6 C, 36 psu salinity and 179 ?mol photons light - unclassified eukaryote CCMP 2098 (MMETSP0991)



Overview

Basic Information
IMG/M Taxon OID3300017276 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212055 | Ga0186343
Sample NameMetatranscriptome of marine eukaryotic communities from Northern Baffin Bay in L1 medium with seawater and antibiotics, 6 C, 36 psu salinity and 179 ?mol photons light - unclassified eukaryote CCMP 2098 (MMETSP0991)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size64404795
Sequencing Scaffolds4
Novel Protein Genes4
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota4

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationNorthern Baffin Bay
CoordinatesLat. (o)76.285Long. (o)-73.0575Alt. (m)N/ADepth (m)75
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051149Metagenome / Metatranscriptome144Y
F073111Metagenome / Metatranscriptome120Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186343_113202All Organisms → cellular organisms → Eukaryota1409Open in IMG/M
Ga0186343_116083All Organisms → cellular organisms → Eukaryota1253Open in IMG/M
Ga0186343_124195All Organisms → cellular organisms → Eukaryota936Open in IMG/M
Ga0186343_125889All Organisms → cellular organisms → Eukaryota879Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186343_113202Ga0186343_1132021F051149MALLGHCFDRADWETITGGTGKVPKDTFITTITVRNHAPSLRAWLEFWRIDELLEILESLDVMSPTDLMLLEEKDISKIHLKAVQKKHWQKAVAHSKYLEAIHFDKPPSPLNLWLESWRLDRLGEGLFNLGCDVKEDIIDLMESDAAALGMKLLEERRWKQATAQLLTVIRHYDFNDNTRNSAPSLVTWLASLKLQELDEPLKLLGVVELCDLGDMDDRELASLGLNKLQRKHWDMGMLQVLKAKSEARLDGKNDDPTFRAFLESWRLGRLGPVMGDLGAYVQQDLLDLEPNEYSLLKMRPLEAKRFEQAMIALEEEFQQWT
Ga0186343_116083Ga0186343_1160831F051149FCLKNLQLQRTSQRAPTPLIMGAGASAPGAFDRLPDPVDEATALALLGNCFDRADWETITAGTGKCIRSTFITTIEVRNHALSLRSWLEFWRIDELLEVLESLDVMSPTDLTLLEEKEVSKIGLKAVQKKHWQKALAHSKYLEAIHFDKPPSPLNLWLESWRLDRLGEGLFNLGCDVKEDIIDLMESDAAALGMKLLEERRWKQATAQLLTVIRHYDFNDNTRNSAPSLVTWLASLKLQELDEPLKLLGVVELCDLGDMDDRELASLGLNKLQRKHWDMGMLQVLKAKSEARLDGKNDDPTFRAFLESWRLGRLGPVMGDLGAYVQQDLLDLEPNEYSLLKMRPLEAKRFEQAMIALEEEFQQWT
Ga0186343_124195Ga0186343_1241951F073111PLHLWLESWRLHRLKKGLFDLGCDVKEDIIDLDDTNAALLGMKLLEERRWKQATAQLVKVIRNFNFNDNTRNSAPSLITWLESLKLEELDEPLKLLGVVELCDLGDMDDRELHSLGLNKLQRKHWDMGMLQVLKAKGEAGLDGKNDDPTFRGFLESWRLGRLAPVMDDLGAYVQQDLLDLEPSEYSLLKMRPLEAKRFEQAMIALEEEFQQWA
Ga0186343_125889Ga0186343_1258891F073111PLHLWLESWRLDRLKSGLYELGCDVKEDIIDLTESDAALLGMRLLEERRWKQACSQLVKVIRNYDFNDNTRNSAPSLTTWLASLKLEELDEPLKLLGVVELCDLGDMDDRELHSLNLNKLQRKHWDMGMLQVLKARKEAGLDSKNDDPTFRGFLESWRLGRLGPVMQELGAYVQQDLLDLEPTEYSLLKMRPLEAKRFEQAMIALEEEFQQWS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.