NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017279

3300017279: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in K/2 medium, 17 C, 35 psu salinity and 333 ?mol photons light - Calcidiscus leptoporus RCC 1130 (MMETSP1334)



Overview

Basic Information
IMG/M Taxon OID3300017279 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0212231 | Ga0186519
Sample NameMetatranscriptome of marine eukaryotic communities from Atlantic Ocean in K/2 medium, 17 C, 35 psu salinity and 333 ?mol photons light - Calcidiscus leptoporus RCC 1130 (MMETSP1334)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size35468902
Sequencing Scaffolds5
Novel Protein Genes6
Associated Families5

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Calcidiscaceae → Calcidiscus → Calcidiscus leptoporus2
All Organisms → cellular organisms → Eukaryota2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationAtlantic Ocean
CoordinatesLat. (o)-34.46666667Long. (o)17.3Alt. (m)N/ADepth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004926Metagenome / Metatranscriptome418Y
F009840Metagenome / Metatranscriptome312Y
F063376Metagenome / Metatranscriptome129Y
F071872Metatranscriptome121Y
F102465Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186519_108134All Organisms → cellular organisms → Eukaryota → Haptista1313Open in IMG/M
Ga0186519_112639All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Calcidiscaceae → Calcidiscus → Calcidiscus leptoporus997Open in IMG/M
Ga0186519_113527All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Calcidiscaceae → Calcidiscus → Calcidiscus leptoporus948Open in IMG/M
Ga0186519_114454All Organisms → cellular organisms → Eukaryota897Open in IMG/M
Ga0186519_116606All Organisms → cellular organisms → Eukaryota789Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186519_106048Ga0186519_1060481F102465SGLEMSLPAAHVNTPTRAIRCLVDADSAHPIASFLGDAAYSILQLGHTAYLGNLLSPFTCASTQAGAGAGGGDAGTQLRAQKRKLFFSGFIVPLFFPELMLKYKYNGTIQVPLKAFRGDIDFARACLPTVEPNVDLGVLTLLVTYLNEHGGSLDSGAVTIRDNLATSKMTTSNLSEEWTKVYGPIMTSAAGLCRKLAPDYFAKLPVWLCNFLEGMEVSHYLALFGDTPTVEVERIFAAVRKFRPAIHNVCVPAELEGLLCAIHARAMACKPMDQE
Ga0186519_108134Ga0186519_1081341F071872VFGDVNLAEEQVQGKYAGSPGEGGWPTIRTYNAETGYEGAFAGDWKEANSLDGAMCDVFGKEETMQRYIEEMSGIHAPGVFVGGVLCTDFDCLCAQKDAGACSKQETTYHTKFKVAPLADVQSRLKLLSASLAKSGKSDEWMKQRITILKLLASTRASDETAASDSKQEL
Ga0186519_112639Ga0186519_1126391F063376CGGHDEEILSCNIAEAWSNLKIAYDAFDYKGTALPQTMAYFQWLKKHLSAGHVLAWMLMWNGQKYPIYGLTPPEGMYGHVEPVIGIQSNHPLNDTTIYDDDVVVHYTDGGTNTVYRRLSTLPCKWAGAGHKAECGWYQYGLGNPYGFGWAATGFTHDDKHAQAVPAYLHIQPWKSEPDTRGGEQPEALKGTLTATGLVAGTTYTIYRWDSIETAFTYAEQYNKASFKATSDMYVYADDKSFLSDGATYYRVLKAEPSLVESGV
Ga0186519_113527Ga0186519_1135271F063376SNLKIAYDAFDYKGTALPQTMAYFQWLKKHLSAGHVLAWMLMWNGQKYPIYGLTPPEGMYGHVEPVIGIQSNHPLNDTTIYDDDVVVHYTDGGTNTVYRRLSTLPCKWAGAGHKAECGWYQYGLGNPYGFGWAATGFTHDDKHAQAVPAYLHIQPWKSEPDTRGGEQPEALKGTLTATGLVAGTTYTIYRWDSIETAFTYAEQYNKASFKATSDMYVYADDKSFLSDGATYYRVLKAEPSLVESGV
Ga0186519_114454Ga0186519_1144541F009840MQQASALLLLPRAAAAADRKPTLKEMVAQLDASTPQEDRNAAGEKADHFPQISFEGAQGQGRKVVFTVPHENLSPPSFSYIELMWIKDASSGAILTAKKFSASDPNLVITAFGSSGQKLTAASKDNKYGIWQGTFVVP
Ga0186519_116606Ga0186519_1166061F004926GRSLHCVRVKNPGQGADWTVDAVWAHVEAMRAAFAASGTEPIVYVHNHDFDGRGAHIGAALFRRAQAAGFPYLVVDGAYRKNGTHNDNTVLAAALTLSPVQRDALAEYNHNQQRIEELLCRFDSRTSQMTPWDSSWAGGTEGSDLRIAKEYAIDARKVNAAKEVATAVFPLERAVTPFSEYKLRLGLAILLEPLIEPKTAAAVKAWVAAGGKLKVGGPVLVGLKRWETLVAKPPEVDMLLANMAAELEAALAEEAAMVVADG
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