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Sample 3300017310
3300017310: Metatranscriptome of marine eukaryotic communities from Great Marsh, Delaware in seawater, 23 C, 32 psu salinity and 622 ?mol photons light - Aristerostoma sp. ATCC 50986 (MMETSP0125)
Overview
| Basic Information |
| IMG/M Taxon OID | 3300017310 Open in IMG/M |
GOLD Reference
(Study | Sequencing Project | Analysis Project) | Gs0128947 | Gp0212161 | Ga0186449 |
| Sample Name | Metatranscriptome of marine eukaryotic communities from Great Marsh, Delaware in seawater, 23 C, 32 psu salinity and 622 ?mol photons light - Aristerostoma sp. ATCC 50986 (MMETSP0125) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | National Center for Genome Resources |
| Published? | N |
| Use Policy | Open |
| Dataset Contents |
| Total Genome Size | 29350663 |
| Sequencing Scaffolds | 2 |
| Novel Protein Genes | 2 |
| Associated Families | 1 |
| Dataset Phylogeny |
| Taxonomy Groups | Number of Scaffolds |
|---|
| Not Available | 2 |
Ecosystem and Geography
| Ecosystem Assignment (GOLD) |
| Name | The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Type | Host-Associated |
| Taxonomy | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp) |
| Location Information |
| Location | USA: Great Marsh, Delaware |
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A |
Location on Map |
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Associated Families
| Family | Category | Number of Sequences | 3D Structure? |
|---|
| F034478 | Metagenome / Metatranscriptome | 174 | Y |
Sequences
| Scaffold ID | Protein ID | Family | Sequence |
|---|
| Ga0186449_105911 | Ga0186449_1059111 | F034478 | MDVESNQLIQVDRPTVVRKVDIYGQPSDGKTSFDHREESEPVGNFLAQMRIDSISLWFLRTDNQNVALQGICTSYKKLNEDNFFESFESVDDKIKNSDRDYDIVHFDDGEYIREINVTTASANQKVGAIEFVTTNKGRKVLAYGSTNANAEDGKQSEPLPPGDTKKFDFLKGEGDNFPGYVVGFYGQYDENHITYLGVYVAPLTEINYYARRPYILTFKKMQNDKALIAEVAKNLSVERDNERFKDANLEDTDGNSSKILLYFLDASLQHPELFKAVLEYL |
| Ga0186449_109551 | Ga0186449_1095511 | F034478 | ITSEEKNKKKWTPNQPTIFQDARSTIVRKVDIFGQHEDGKTTFDHRDEAEPVGNYLPQMRVDSVSLWFKRTDNQNVLLQGICASYKKLNEDNFFESFDSCDDEIKNSDRDYDILHFDDGEYIREINVTTASANQRIGAIEFVTTNKGRKVIAYGSANSEDGKQSEPLPPGDTKKFDFLKGDGDNFPGYVVGFYGQYDGKGDNSSITHLGVYIAPLTQINYWSRRPYILAFKKMQEDSSLIDKIANTLEVQKDGDKYKDANLEDTDGNSSKILFYFLQISQHHPELFKAVLEYLXESIDRC |
