NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300017313

3300017313: Metatranscriptome of marine eukaryotic communities from unknown location in L1 medium, low P, at 15 C, 32 psu salinity and 235 ?mol photons light - Prymnesium polylepis CCMP 1757 (MMETSP0146)



Overview

Basic Information
IMG/M Taxon OID3300017313 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128947 | Gp0211796 | Ga0186084
Sample NameMetatranscriptome of marine eukaryotic communities from unknown location in L1 medium, low P, at 15 C, 32 psu salinity and 235 ?mol photons light - Prymnesium polylepis CCMP 1757 (MMETSP0146)
Sequencing StatusPermanent Draft
Sequencing CenterNational Center for Genome Resources
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size37986692
Sequencing Scaffolds5
Novel Protein Genes8
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameThe Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
Location
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013853Metagenome / Metatranscriptome267N
F016763Metatranscriptome244Y
F022203Metatranscriptome215Y
F035176Metatranscriptome172Y
F037016Metatranscriptome168Y
F038555Metagenome / Metatranscriptome165Y
F080844Metagenome / Metatranscriptome114N
F098438Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186084_102855All Organisms → Viruses → Predicted Viral1912Open in IMG/M
Ga0186084_109933All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii1085Open in IMG/M
Ga0186084_111580All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii992Open in IMG/M
Ga0186084_115213All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Prymnesium → Prymnesium polylepis824Open in IMG/M
Ga0186084_119565All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae672Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186084_102855Ga0186084_1028551F037016GKTPHEMGSNLNAAMRRMFPNTKPCEEWTAEGLQAYQEQLHMHRHEDLDSIYQSSNDNRRMVHASLDDYRTHWTRVNELVRTHGHLAKMHRDGHCHEAVMWLVHHVPVEEQQTRFANQVAPLLPLSAHYGPCGSNATASELEVCNVYEGMRSCAECHSGSGIPMQDYNDPNGYIPEDPKLPGYARQRRCDQNYLPKCGPCEGIGGPYWGDDLKYFQPTNCEVVATPEQVAQADRVLPQFGEQLIVHQLGSDRLARTQNAANFALYSQIRSTLWYDFPLNGTSTGTAVDGMAKLRHDTFYDDLKYKWLDNGLVSEVHLQSRAQRDANVTGPMISLLHGLLGYGKYMGGLTCLADPVGVPVLGGSVVVNGSAHSSFMEGADYKGRVTIGVEYDGFKMGDKGNGDMKAKRNMTVDHYSKWFLHIFMDADKQSPTYGLPVRFYGPYSGFAVYIAINKTQPPAEAWDTACVGEQINGWPSEEHKPLFPCVGKKIKDYPCMVVGKTHKEVCDPWANASAAVNQTMEQMPQFETFKGAFGTVRIPSNLLNTPQV
Ga0186084_109933Ga0186084_1099331F022203SIPPITDVRNTTTPTHAPRVNMLYKLVAMAAFLVCTDALKIDANMGRRSVVAKGAALGALVPLAAFAELKKAGDAEIYKRADEGKLNAARVIERAKTGDLADGSSATCSELDALIAVDRDAIEFEKDKVDARFGNDKAKVQATEDTLQAQVDKLKKIRKEKGCSSAQANLKQASDFEVYKRADEGILNSARVIERAKAGKLVDGSGASCSELERIIATDKKAVQFEKDKLEAMGSKVDPKDKKIVAEAEKVIEKQVAKLAGLQKTKGCL
Ga0186084_110510Ga0186084_1105101F016763QVCMLLTGFRPSRRAAPSWICPPLADSPCGHSPPAHRSESHQQAMGGGEVNYVHEAEIWRQQLKNEVEVAATWGDNWGFLTGREPPPARGFSQKVAKYAYGQGKWSVKSVRVPDDTEEGVSAAESEQNARKMMSTLSYDTKPVAPVKPCDAKGVRAVSNDVDGVESREAALLMRSHRLQSLGDACLTDGLNPGEKYRAPVLDSHEYGWRVPMKGNGMPNLEMFGVAEHGKQGVVKKFN
Ga0186084_111580Ga0186084_1115801F013853PPKALCHGPAPPTRVPAQVKISQPIADTGSKWDSYSKFRLGGMLSKVPRHIRAAGDPNRLAFTLGYPPFVAVSVGDKYLLTFDTTRVNEDLGLTFPEDYGQIAGFQWLPNLVLLVGLTNGYIVAVDFGALIKLQQSHKLPDRVSAMGTTKVFNEYLQDLSAFYTSATGQRVACCGDTAVKIVHRTGVELEVHLEVALDRKPTIGEFLDKVEWDDRAAAFACSSTDGYLYVHEILD
Ga0186084_115213Ga0186084_1152131F035176TMGVLPAAADKPKILFYGAMMAIQNYGFYEAYYGLYPQIPSFVGSVDCGTLRFWVGFFALDCFIESFCCLWMAMGGYVSSNFWFAFGWILHLIVALPYCVSTVAIPISMYADEGKVCRKAMGPAEDVLSAVYWVHCSLFMCYVWMMLSITYYSFLKPTFITKTKIGDSA
Ga0186084_119265Ga0186084_1192651F080844EEKAPQPGYVVGAVTTRLTVTVPHGIAGGELVRVAAPDGSYHSIMVPAGLMAGQQFSVELLAGSNAVDYAKLKMELEAERALRRETQQEALRCRTALEELQQKRMADHAFFRDMIKRQRRSIEHLTEV
Ga0186084_119565Ga0186084_1195651F098438ARLGVKLQGPPSGWGWKDDQLFGIEPKRAPMAAVFVIDRTFEGFLQKVVDAVVNVYDKYLEPDDLVGYYGLGDKWIFEPQEKGKHAKKLREQIVGSVEKAGDPHVYSSIAKCVDVLSTQVDDKYSKWLVVLTDTADFECANEKGVFDKGSKERAEKAVDGVVKQMRALSGLNLVVIDASGIANFDAKHMLWPTWHKLSQKLTDDVGDANTGLNIEATNADEID
Ga0186084_120721Ga0186084_1207211F038555RELLAGKLKLAKVYGQEEPPAAEDELEWEARYFVLFDSRRICHFDDLLDGQPLGDRGLIYLTNIKSVEKVVGVPTFVMKADSKVYMFKLEPHDEATMRTWIAAISQELDLAR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.