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Sample 3300017461
3300017461: Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 5. Combined Assembly of Gp0212721, Gp0212722
Overview
Basic Information
IMG/M Taxon OID 3300017461 Open in IMG/M GOLD Reference Gs0128960 | Gp0212721 | Ga0187309 Sample Name Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 5. Combined Assembly of Gp0212721, Gp0212722 Sequencing Status Permanent Draft Sequencing Center Stanford University Published? N Use Policy Open
Dataset Contents
Total Genome Size 40788226 Sequencing Scaffolds 2 Novel Protein Genes 3 Associated Families 3
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 1 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Yellowstone National Park Obsidian Pool Microbial Communities Type Environmental Taxonomy Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hotspring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Unclassified
Location Information
Location YNP, Wyoming, USA Coordinates Lat. (o ) 44.428 Long. (o ) -110.5885 Alt. (m) N/A Depth (m) N/A Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F068875 Metagenome / Metatranscriptome 124 N F081384 Metagenome / Metatranscriptome 114 N F096328 Metagenome 104 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0187309_10501 All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 16245 Open in IMG/M Ga0187309_13224 All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus 7142 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0187309_10501 Ga0187309_1050118 F081384 MLITPSDFGGDYRLFNANNLDPDTIQAIDQAQAELARDLFPVGHSFITGNLPSAPPNLGLRVLGLHNLFVPWVFLRLELGILGAGVKRASDVPGRSRFASGAFFAIARQYRYFLGEWLPYEGYIDAVATSPTLLSVPIVASQIVAPGMEIEIGGAKYSVVASATGLLTISPALPSGVTNLRFRQLSLRVDKKWNYL Ga0187309_10501 Ga0187309_1050122 F068875 MALQCRCGQPIEAFGVPSCYTKMAPIVRLIFTTRPNQLITDPATQLELSPTNTSFPDIYRLITPRLDDVSSERPEAVTEEIGATTYYVRDAARTITATVGQLPTEWAQRVAELRCQAEVGVFLVDANGTIWGRKVDTQTGVAGASLPVVPSSIDARFAFPSYSSVQKHTITFQLPFTLADYEIIPLWNDGGVLNYSAPQPVGFRVFQESGNWVVFLFSKYHAPNGTIVVPIANVANPADIDIFDDSGTTLVASANANLGGGKYALNNPLTAGTQYILDCTAITSPPRTQFDWPALRVPFR Ga0187309_13224 Ga0187309_132249 F096328 MIEAAYFWSKDAEVILAPYVQALVGAERPPKISSPISATPWDYSFEGILVDLKLAMKAGIYGKISDQTLADIKKALRDGVLVAVLVPPRLYLLSPWDIVWDGSLDALRNRPSVLVPKNVVDRVWDVYAKMTS
