NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300017482

3300017482: Hotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 2. Combined Assembly of Gp0212715, Gp0212716



Overview

Basic Information
IMG/M Taxon OID3300017482 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128960 | Gp0212715 | Ga0186907
Sample NameHotspring sediment microbial communities from Obsidian Pool, Yellowstone National Park, Wyoming, USA ? Obsidian 2. Combined Assembly of Gp0212715, Gp0212716
Sequencing StatusPermanent Draft
Sequencing CenterStanford University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size83884807
Sequencing Scaffolds12
Novel Protein Genes15
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Methanodesulfokores → Candidatus Methanodesulfokores washburnensis1
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 11
Not Available2
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Desulfurococcales → Desulfurococcaceae → unclassified Desulfurococcaceae → Desulfurococcaceae archaeon1
All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Primavirales → Tristromaviridae → Alphatristromavirus → Alphatristromavirus PFV11
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp.1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 14
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameYellowstone National Park Obsidian Pool Microbial Communities
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Yellowstone National Park Obsidian Pool Microbial Communities

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationYNP, Wyoming, USA
CoordinatesLat. (o)44.428Long. (o)-110.5885Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000750Metagenome / Metatranscriptome908Y
F024140Metagenome / Metatranscriptome207Y
F062912Metagenome / Metatranscriptome130Y
F066921Metagenome126N
F067920Metagenome / Metatranscriptome125N
F080679Metagenome115Y
F084461Metagenome / Metatranscriptome112N
F100050Metagenome / Metatranscriptome103Y
F101504Metagenome / Metatranscriptome102N
F104050Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0186907_10077All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Methanodesulfokores → Candidatus Methanodesulfokores washburnensis12525Open in IMG/M
Ga0186907_11407All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 15230Open in IMG/M
Ga0186907_11428Not Available5501Open in IMG/M
Ga0186907_12396All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Desulfurococcales → Desulfurococcaceae → unclassified Desulfurococcaceae → Desulfurococcaceae archaeon9917Open in IMG/M
Ga0186907_13930All Organisms → Viruses → Adnaviria → Zilligvirae → Taleaviricota → Tokiviricetes → Primavirales → Tristromaviridae → Alphatristromavirus → Alphatristromavirus PFV110226Open in IMG/M
Ga0186907_14054All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Acidilobales → Caldisphaeraceae → Caldisphaera → unclassified Caldisphaera → Caldisphaera sp.9497Open in IMG/M
Ga0186907_15004All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 16180Open in IMG/M
Ga0186907_15349All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 15441Open in IMG/M
Ga0186907_15496All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon5205Open in IMG/M
Ga0186907_15756All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 116995Open in IMG/M
Ga0186907_16024Not Available10305Open in IMG/M
Ga0186907_16313All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Hyperthermophilic Archaeal Virus 17571Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0186907_10077Ga0186907_1007718F104050VSEAKKCIIGLRRHCIVHDALVSDERQKYGTKEFVITYCGMCIKTVYAKAKRKLVNKFSVVNTL
Ga0186907_11407Ga0186907_114078F062912MDPTKVLKVAYDLFLVSDIIDKRSNLDVELLQLLVENDYEIIAKTIIYILIYTVNNHLIYENIRQSYINDAIDLLYIIDKIGFNHDRVIKKFVKLIYQFFSYSLQNKVEFIANKEKRELVKSKLDELVNIIRY
Ga0186907_11428Ga0186907_114287F066921MGEEQEETGRGPTPRAAYARAMRAEEKAQKALEELSEIKSALNDLINALRTHNAPTTPPTPIQAQSLRPGSMIHNVIAEDDEGVTEEIICPTCGTREVRKIPTKIQIKEKEIVPDNYVPAPRSISEALQLLESLRLPDGRTVFESDRFWEKLNELAQKYRPPQKGKR
Ga0186907_12396Ga0186907_1239617F104050MNYTTWRVALKSMPRSKQCIIKLRKYCVVYDNIAKEEKEKYGSKEFVLTYCSLCIKSIYAKAKHKLVNKYSVVNTL
Ga0186907_13930Ga0186907_1393014F100050MGNMFLTMNGVIRYVIATLLATVGGYVGYYFVPIEPFGTAGNVLFVAAIFGLFAGLLELTGFFGNVVNAFLITFPVYFLAPGGITVVWAYGNIGYAIGNVLGQLARLSVKGTIPEAKAL
Ga0186907_14054Ga0186907_1405415F101504LIYFFENNYPFKSLALYTSYCVITKTTCIVIGNTGSGKSEILNFLKLNFDKVLTLNTISQASLKQIATELNNFDGILFVDDIGAINTEYMRITTMATLTYLAYQHYLRRLDYQTNLEIKNFNASLIINLQPAVFDEIVSNTSFEANIMDKSYRYYNMRIPDNKPFQHPHIKELQHIKDKFENMKVDIDKQKVEALANNFMTFNSVVRRYKIVNNFVKLTAILNGHKTATSEDYQFVAKMLLNNIIESELLERKGFTSTFKFNTFLFNVMLMSKYYGDVFHYSKLKTYLNVSTKTIYNYAKMNNVKIDNGYIIYDNERILKVLKHVI
Ga0186907_14054Ga0186907_140545F024140MNWKPTSLSHVVSILAIMIALLGINAITFYYVHSPSTTQLVFIELTNITGLIGMSYYMVSFSANEKGVSIESKPQTTT
Ga0186907_14054Ga0186907_140548F084461MSFDLGLLIKNNKAILQTENGKIVLRISFDDLVSAMYNGLPEQSKKVVSITHDGKQIIISFDASILSGMVGIIAR
Ga0186907_14054Ga0186907_140549F067920MPADLVFGISDQGLFGAISSVLEYILSFLKVLVEQASKYAIDFLKQLWDNPEKTITFLTLLGVILV
Ga0186907_15004Ga0186907_150046F000750MIASIVVTAVLFSYWLYKKLAKPKPFQFPIDVQTGDVIHSAFGSLLANLSMQGHLFDVAVGVVLYLAYQIFELTVKKDTIYKDIATFTAGYFITLTAKYIPV
Ga0186907_15349Ga0186907_153496F000750MPMYLPLIVTAFLFSYWFFKKRFKAKPLSLPINVQTGDIIHGAFGSLLANLSMHQMYVDVMVGVLMYLAYQFTEFAVKHDEVYKDIATFMAGYFGTLAVGGIPL
Ga0186907_15496Ga0186907_154964F104050MSEVKKCIIRLRKYCVVYESLSSEEREKYGSKEFVITYCGLCIKSVYAKAKRKLVNKFSVVNTL
Ga0186907_15756Ga0186907_1575631F000750MIASIVVTAVLFSYWLYKKLAKPKTFQFPIDVQTGDVIHSAFGSLLANLSMQGHLFDVAVGVVLYLAYQIFDWTVKKDTIYKDVATFTAGYFITLTAEYIPV
Ga0186907_16024Ga0186907_160248F080679MGEIMDEEAISKVLSRKSLRIIRYLYNNDYATLRILEKNLKMNGITVRTYIDLLHKHEVIKVSRVGRAYVIMLNREGKTTKAIIEFLREVGYL
Ga0186907_16313Ga0186907_163138F000750MYLPLIVTAFLFSYWFFKKRFKAKPLSLPINVQTGDIIHGAFGSLLANLSMHQMYVDVMVGVLMYLAYQFTEFAVKHDEVYKDIATFMAGYFGTLAVGGIPL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.