NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300017922

3300017922: Subsurface microbial communities from deep shales in Texas, USA - hydraulic fracturing test 6_PW_90



Overview

Basic Information
IMG/M Taxon OID3300017922 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118431 | Gp0208780 | Ga0182238
Sample NameSubsurface microbial communities from deep shales in Texas, USA - hydraulic fracturing test 6_PW_90
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size96657288
Sequencing Scaffolds5
Novel Protein Genes9
Associated Families9

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Desulfurococcales → Desulfurococcaceae → unclassified Desulfurococcaceae → Desulfurococcaceae archaeon1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Fastidiosipila → unclassified Fastidiosipila → Fastidiosipila sp.1
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSubsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Deep Subsurface → Fracking Water → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → planetary subsurface zone → fracking liquid
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Subsurface (non-saline)

Location Information
LocationUSA: Texas
CoordinatesLat. (o)30.238Long. (o)-102.628Alt. (m)N/ADepth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000388Metagenome / Metatranscriptome1201Y
F027047Metagenome196Y
F043719Metagenome155N
F045470Metagenome152N
F064264Metagenome128N
F066220Metagenome127N
F079441Metagenome115N
F094638Metagenome105N
F102255Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0182238_1001416All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium6313Open in IMG/M
Ga0182238_1003485All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Desulfurococcales → Desulfurococcaceae → unclassified Desulfurococcaceae → Desulfurococcaceae archaeon3487Open in IMG/M
Ga0182238_1015284All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Fastidiosipila → unclassified Fastidiosipila → Fastidiosipila sp.1265Open in IMG/M
Ga0182238_1023266Not Available902Open in IMG/M
Ga0182238_1034850Not Available641Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0182238_1001416Ga0182238_10014162F079441MRLESYELVEQLKTLNENIRTLNSILKDWANITNRIDEQIRLLETQRYSSKYWQFEPIEHYDLETLQPGEVTNLLSTTESGAFVLFGSFTTSDKVYWEVRADDLVIKGTIEDLYNYGLIGYNPRTLWISAGNGGYAVWATPNPYIEYRNKIQVYGKNIGDTEIQYNYIIFRYKYIGGD
Ga0182238_1001416Ga0182238_10014163F043719MLRNISKFAEFTAAATDTIVHTVSTNRKAVITNIIVTNKESADILVTLYDGASTGEDKKLEIKVATGDTKVISLEDEYGIEFRTSVVAQVDSYTSGSSIWVGGYEA
Ga0182238_1001416Ga0182238_10014164F045470MVFEEFKPVVSPRMNVRVLPDYGFYRVLSVDPVGVLIKDFGKTLAADAESKNNELEEVYMQDNEMAQWRIWVLDPVGIKLKVVGQEKLRGATKYSTSEIRSFSPETNDDDGISQFFSFEDEKIYVDIVNLTKDTLTSQRIKLIGYKYVLEKIDHTPEIYTDIPFGLVR
Ga0182238_1001416Ga0182238_10014168F066220MGLFVNVRELSVRELMDLARSNENSVAYTPFGRFGLRTYIRRAAPWKGLKGDAFWDEAKKHGNLANGLRSAIDISRRFAGNTGVALVKYMDGSYGIMPYKSALQGQGKTIADIIATAPNYFRLITRPEASELIKAAKLQPVVY
Ga0182238_1003485Ga0182238_10034853F027047MEVGSLIIAVFSAVVYALSMYVKKHLNKENPQDFDVAKFTTTVIWGAIIGVVLQYSGVGITEQTVEQQFITYTGLIAITENIVRAIIRSIRRRRSWSTTILAI
Ga0182238_1015284Ga0182238_10152841F000388MKVIKVTKEYFETEDEKVYFFEPLGKEILVDDLQKIVDANEKLVKELKGGVRRADWIESDIKTTTREESY
Ga0182238_1022001Ga0182238_10220011F064264NEPFTFAGATITYGGVEVAKVQAMDVDITTGFELIYALGQRTAVDGIARAFEVGGRISAVAIDDTFVKDTLGVGADATAPDELGVATETSIVITLTNDTDTKTLTIGGVVIDDLGSSIEANELILFDATYVGRTLTIESPTTA
Ga0182238_1023266Ga0182238_10232661F102255LKLQAIQRMVKNKVLLRGESGTGKTHCALMVSFLFSEHGKKVCYVDPEWGCQKEIVELVNAGEIGEEQIENIEIYVTPKWRTGTVKEIDEGVYIGGFTDVFDRLQGDLIVIDSMSELMAIHKNYLEQKFIAQGYYIPKEKEVEIKDPDTFTLPFQHYTKIYDELL
Ga0182238_1034850Ga0182238_10348501F094638DNEVVRELTKLSTKMDMVCADISELKTMTRNFLERLTILEERVRSLEDWKDEVTKYDRLKERVKYDFRSAVAGGVAGGLVGVVGSYLIKLMWG
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