NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300018619

3300018619: Metatranscriptome of marine microbial communities from Baltic Sea - GS855_ls4



Overview

Basic Information
IMG/M Taxon OID3300018619 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129055 | Gp0214205 | Ga0188877
Sample NameMetatranscriptome of marine microbial communities from Baltic Sea - GS855_ls4
Sequencing StatusPermanent Draft
Sequencing CenterJ. Craig Venter Institute (JCVI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size57283556
Sequencing Scaffolds20
Novel Protein Genes25
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum1
Not Available5
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii1
All Organisms → cellular organisms → Eukaryota → Sar1
All Organisms → cellular organisms → Eukaryota → Haptista → Centroplasthelida → Panacanthocystida → Acanthocystida → Marophrys → unclassified Marophrys → Marophrys sp. SRT1271
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED2031
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP13931
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Synurophyceae → Synurales → Neotessellaceae → Neotessella → Neotessella volvocina1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetatranscriptome Of Marine Microbial Communities From Baltic Sea
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationBaltic Sea
CoordinatesLat. (o)54.570232Long. (o)11.332183Alt. (m)N/ADepth (m).3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000075Metagenome / Metatranscriptome2622Y
F000088Metagenome / Metatranscriptome2436Y
F000191Metagenome / Metatranscriptome1666Y
F000237Metagenome / Metatranscriptome1498Y
F000826Metagenome / Metatranscriptome873Y
F001145Metagenome / Metatranscriptome765Y
F001219Metagenome / Metatranscriptome744Y
F001904Metagenome / Metatranscriptome619Y
F005505Metagenome / Metatranscriptome398Y
F005667Metatranscriptome393Y
F006869Metagenome / Metatranscriptome363Y
F013303Metagenome / Metatranscriptome272Y
F013838Metagenome / Metatranscriptome268Y
F014742Metagenome / Metatranscriptome260Y
F020701Metagenome / Metatranscriptome222Y
F026894Metagenome / Metatranscriptome196N
F028830Metagenome / Metatranscriptome190Y
F034583Metagenome / Metatranscriptome174N
F044306Metagenome / Metatranscriptome154N
F061886Metagenome / Metatranscriptome131Y
F082151Metagenome / Metatranscriptome113Y
F084268Metagenome / Metatranscriptome112Y
F093978Metagenome / Metatranscriptome106N
F101210Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0188877_1004707All Organisms → cellular organisms → Eukaryota1298Open in IMG/M
Ga0188877_1005567All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum1177Open in IMG/M
Ga0188877_1006994Not Available1033Open in IMG/M
Ga0188877_1007297All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii1008Open in IMG/M
Ga0188877_1009035All Organisms → cellular organisms → Eukaryota → Sar887Open in IMG/M
Ga0188877_1009834Not Available839Open in IMG/M
Ga0188877_1011719All Organisms → cellular organisms → Eukaryota → Haptista → Centroplasthelida → Panacanthocystida → Acanthocystida → Marophrys → unclassified Marophrys → Marophrys sp. SRT127752Open in IMG/M
Ga0188877_1012305All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea729Open in IMG/M
Ga0188877_1012974Not Available705Open in IMG/M
Ga0188877_1013040All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum703Open in IMG/M
Ga0188877_1013220All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Monogononta → Pseudotrocha → Ploima → Brachionidae → Brachionus696Open in IMG/M
Ga0188877_1014040All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes670Open in IMG/M
Ga0188877_1015618All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203625Open in IMG/M
Ga0188877_1018303Not Available566Open in IMG/M
Ga0188877_1018869All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum555Open in IMG/M
Ga0188877_1019386All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393545Open in IMG/M
Ga0188877_1019461All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium544Open in IMG/M
Ga0188877_1019513Not Available543Open in IMG/M
Ga0188877_1020673All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Synurophyceae → Synurales → Neotessellaceae → Neotessella → Neotessella volvocina524Open in IMG/M
Ga0188877_1021357All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata513Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0188877_1004707Ga0188877_10047071F020701SIIIMSAIESQNTSVEVPEQTAFNKSFRPIIGTCLAISALAAMALTSSPSGAANPGKPIASTTQLEVVKQGKQPIKDGCANIYGSDPDQVFIDPDTGLRVLTAVFTICDDRSLNGVALDSLGFDHQNDIDIGLTYVETGPGCWLTLYDGPNFNGKTAVISPETSMHLKHVGARNWNDLTRSITTRSSTGDGVALYLSHRVALGSVNDHCVAMYNANPEIFPKADGLYLCGDKNAAKTWNFDLADIIEQGFNIDGSHFGIKYIMSGRKVKLNIFDGPTRNTVSHGPLEMSGHETLDLETVKYGDDHWDSKAKSFTLVEV
Ga0188877_1005567Ga0188877_10055671F005667MADMEPEVGTPPQRQRWATKGVVAGCIGLVVLFAVAQSPFARADKSRQLSEIVVTPPREECAKTTDNCMAQRCCKTTGYTCFLKEAGGDKATCMKECTPGVDGACIAQAVTAPATKSAYTLSSTNLFCFAVYTENTGCTKKSYDLELLRTNLFLGSHIFGCEAYKVYSDVTTWLSPGDVDTVMVTETAAAPFHGEKRKVTGTWINANMFIAVWKQIAVDNLYADKDWTVKADADAVFLPSRLRTKLMAQEVTSNGIYLENCKYVNFGFFGNLEVISHKAVQTYIANIDDCMSSLNYMGHEKLTGSEPWGEDLFAQRCMDLHGVDKVSDFTLTTDAACEAFRPEGEKKNKKWTPDCATTQTPAMHPFKNP
Ga0188877_1006994Ga0188877_10069942F006869MADTVLLVSEQRMKQWTSLDNNIRIDVLTPSILNAQNVYSQQSLGTRFYNRLKEGVMNNDLTANENAFLKDYVGPALMQYALYLVLPNLKYKLVEKGIVSGTSEETAATTLDDMKYLRQNAMDLAQFYDERLREYLKDNPGMFPEYTNPGTDGMQPDRGEAYQNQLVTKIPLKRNERNLWIYEDCGTDCNPDCSNCY
Ga0188877_1007297Ga0188877_10072971F001904MMKAVFLAVLAFLALSCVAVSAQTDFEIAALEVAGDCHPECRWQCDDPVCPAQCHPVCERPKCQIHCEETECAKCKIHCDKPQCNVRCPKDLCEKNDCPKCETVCAPANCRTQCEAPNAVCTPMCEATKCDWKCKKPVTCPKPKCELVCERPKCAAKKRAAGPSFIETASGDKAENPTCCPCSVQANVAAAMQQASKNGDVEEEMMPSFMEVVHSMKFKEAASAESQCCPCAA
Ga0188877_1008161Ga0188877_10081611F000237ESDGXMLGGYAFFXFHYIIALGISLSATHLSDLTLTIIANIFXSLFNNIYKTYYIVFTNKHLNVDQLTRLMVLHYFTPXYYLYLVKLHILFCHESXDTDSGESTFEDKSGSYVSXFYDAFLKEIQDAXYXTIFVFIYFFMHHFSGATVNYFFFERXNISELDEIRFYGVAPHXYFRPLMGILVITPTHYEGLMXFGLXLILLAFLPIIYNFYNSFHKYVAAIPMQNSLLQTTFFMFFMMSLYCSASMLPCGRYYYEPEGGYVGNPXVKISYQFGYLYLGXFIHHLDVLDHYIFQFSQTFLRKCTLNMNYVNRSF
Ga0188877_1009035Ga0188877_10090351F001219LRIKNIRXXXXAIIVTFKFINPVSKEIDDRAEFINYNLRKSTILLTFGYEKLSDCISLLTEEINELNRQTKLTRNYSNLKFENEVGSIQKENLKILSKLKGDLSIKSAFLFS
Ga0188877_1009834Ga0188877_10098341F101210MAITVATLDWGNRTPDLFIDSMVKSAKVLDRFRLVDGVKSKVQVPIFDASLTFGNDLCVFTPASSASIGEKEMTVETYKWAFLNCKN
Ga0188877_1010061Ga0188877_10100611F044306ETMKNLYQVTLLSLFMFLLSFSSMAQSTYEINAGEQITMSLEWLSSTTTTADFQVRLTNTGTLPVQFNSIIIRGTHAENLMTAGGTLSWVALNNNTNSSWNNWPNFTNALPYKVDKRMLNYSSNVKFFNSETAPLIPAGDGLVVGSFRLTVTGGTWSPNADFSFDFEPTAAVIGYVDGLKTVSTLKIHGNNIICLVSGPSQLGVSENSNPEFSVHPNPTNGKFNITLPSNVKANVSVVDAEGKVILEKNNLSNGALMNLGNVATGVYFLNISHGN
Ga0188877_1011719Ga0188877_10117193F034583YKFYYYMPQLDPFVVCESSVSLLLFFWILIFLFVYILVPLIKLRFVIVSEKNSSHESGETSVPFYGNAFKFNDTFI
Ga0188877_1012305Ga0188877_10123051F014742MCNPNMKNSKFMTLQPNMIPKGCYREIRKYQACAANSGKEACLNEKISIMEVCPDHVLEGLREKRKWFLRAEAIDNQTYKRAMSVSDYNKGRNVSDLEIKDWSFGHPKNMRSDSTWQD
Ga0188877_1012974Ga0188877_10129741F013838HNEETMDAQFKDWVFDYFAKLSAQKALELAATALTTEMAADATVLDFDTNAAITSANILSLMQGAYQTMSAVMLSSVYGDANRQLKPAFFLGTAAVQAYQIAIAGLYTTTAQGVVEGNIPAYYGMEVIHFPSLVAGEFIISAPENIVMLTDDYNDVRAIDMKYESELSSDKIWGQFKLGFSYLKGDEIVYAKNFA
Ga0188877_1013040Ga0188877_10130401F000826MKFLTLSAYALLIVSTEAAILKRHNVPGVTFLQTLPDVRADTVADADIAAHEAARAEAAKVKKNPQTALLASVKADLEEINNDMSFGVSYSQKSRNEHAVGLCQKVATAIIDYSKNLINNVNTSSADNKLTEQNAHNIASMIFFDVQLEDAMAALGMSPNEELILNVNRLKSLQKLYLFEQVGGENYLGXAQSGFVPKL
Ga0188877_1013220Ga0188877_10132202F061886DYQNESLNRSKFRDHYNNEFVWVEKNHITDVGVKYDGLSRRVDHKPSHWRCEDEIERGKEFKRMNDECADKIADNRFSIDNSRDWLVNDGGVIDRVHRMSAKTAQTRYELDSIKRNMDNLKAMRTRLLKY
Ga0188877_1014040Ga0188877_10140402F013303TAIKKSSDLGGSEVVTKSKSKWNGSFLGSVNEIFN
Ga0188877_1015474Ga0188877_10154741F000191SGYTVGNLVNQHVRFIESGEKDPLMTYEKAFFTQSRPGEIPPID
Ga0188877_1015618Ga0188877_10156182F026894RVQSPVAGVSRKKTGDSNRVKLTQDDLATARNFGIDINDEAALKRFAKEVKNFSTNT
Ga0188877_1016658Ga0188877_10166581F082151PREQGCQLDNTLQISQIAVFDPFGTNMALNKPCDTSNPLISDKLVPYLPSGPHNVFPSISSCSRAVDGNLVNRDGNAIFQSTEPDSDTVTYDLGQNVLIKRIMYWNRKDCCQNMIAGATLEILNENGEVVNTEVFNNKLIQAFNFPASQSRATLFTDCNYGGEQVAMGPGSYKLAMMQIPKASLSSIKLPNDLEIKLFAG
Ga0188877_1018303Ga0188877_10183031F013838LELAATALATELSADATVLDYDTNASLTSANILEKMEGAYQVMSADMLSAVYGDADRQLKPAFFMGTAAIQAYQIAIAGLYTTTAQGVVEGNIPAYYGMEVIHFSSLAAGEFIISAPENIVMLTDDYSDVRAIDMKYESELSSDKIWGQFKLGFSYLKGEEIVYAKNFA
Ga0188877_1018730Ga0188877_10187301F000075MKFVAIAFVATASSNQYDFMGEDELLSQLSSTLVSAQRSEAMGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK
Ga0188877_1018869Ga0188877_10188691F000088EAVTIKSSLAAKTEFAPPAKGPYASDTDHLSAECYGADEDDIMNDVFERYRVEERNPVGAGTGIWKLPKASGPQWASDIIRRFHVMDDDKVNAYVAANFDNFWKKYDNNGTGEIYETEGEVFLRALLGPNNRFRLAPGALSDMENDELWVPNDFSATPDHKTGPYVHRYNLDDGPFGNGYNKNG
Ga0188877_1019386Ga0188877_10193861F084268MLFLLATPEYNNVQSNTTKVRVHLRSGIAEIFEQHQDLMGKVDNNIVEIETNFENKLEKIWFVLQDAVFIVSNQKGDSAASAFANEGTGVYIYAKRVKEINSSVSMEELSKQYDEKVSLFEAEKQKL
Ga0188877_1019461Ga0188877_10194611F028830IDSFIYMKIKDGQIQSTVYLPQRDAVKHHSIQADKIFQVSEWPDTDKEMKIAFFEGSKVIEAIKHFEHDAIKGEFEFIENDEEFVASTLRIFNNELEITLSCSEPSLGFKDLSQEQRDAIFARSDSQFDFKLDTHSIGKVKNLFTLDKDETFGIKSDVAGINVNGKSFNVVLTPDTNGNG
Ga0188877_1019513Ga0188877_10195131F093978LMKEAFNYLKSRYQEEIFNTSYSDHNQRQVLWMAYNMIEKIKGHLESVMTSGSLAQKELDQLQDLTK
Ga0188877_1020673Ga0188877_10206731F001145VLDFSTFLMNNSEEAFIQLNPNILETNVQNIVILLGILLYANKVSFSVSLENRQKEIIQTIENAQKDVLNASNYYYLAEKGFTQSLFWLQSWKVLYEKDKTEFVTSKYNLVKKGLTETFETTESLIINFENKAFASLQRYMIFVTASRILRKFLFLSEKEQSKLIEVTITKLGG
Ga0188877_1021357Ga0188877_10213571F005505GATVNYFFFERXNIAELDEIRFYGVAPHXYFRPLMGILVISPTHYEGLMXMGLFFILLAFLPIFYNFYNVYHEYVSTIPMQNSLLQTSFFIVFMMSLYCTASMLPCGRYYYEPEGGYVGNPXVKFSYQFIYLYLGXFVHHLDLFDHYLFQFSQTFIRKCSAYSSRTLNSR
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