Sample 3300018689

Basic Information
IMG/M Taxon OID	3300018689 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0117946 \| Gp0126092 \| Ga0194239
Sample Name	Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000852 (ERX1086441-ERR1007416)
Sequencing Status	Permanent Draft
Sequencing Center	Genoscope
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0117946 | Gp0126092 | Ga0194239

Sample Name

Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000852 (ERX1086441-ERR1007416)

Sequencing Status

Permanent Draft

Sequencing Center

Genoscope

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	57398084
Sequencing Scaffolds	14
Novel Protein Genes	22
Associated Families	18

Dataset Contents

Total Genome Size

57398084

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	1
All Organisms → cellular organisms → Eukaryota → Sar	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Oxyrrhinales → Oxyrrhinaceae → Oxyrrhis → Oxyrrhis marina	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Predicted Viral

Not Available

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum

All Organisms → cellular organisms → Eukaryota → Sar

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda

All Organisms → cellular organisms → Eukaryota

All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Oxyrrhinales → Oxyrrhinaceae → Oxyrrhis → Oxyrrhis marina

Ecosystem Assignment (GOLD)
Name	Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Ecosystem Assignment (GOLD)

Name

Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Coordinates

Lat. (^o)

N/A

Long. (^o)

N/A

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000023	Metagenome / Metatranscriptome	5736	Y
F000070	Metagenome / Metatranscriptome	2710	N
F000075	Metagenome / Metatranscriptome	2622	Y
F000351	Metagenome / Metatranscriptome	1248	Y
F003621	Metagenome / Metatranscriptome	476	Y
F008082	Metatranscriptome	339	Y
F014384	Metatranscriptome	263	Y
F026772	Metatranscriptome	196	N
F034476	Metatranscriptome	174	Y
F034477	Metagenome / Metatranscriptome	174	Y
F042154	Metatranscriptome	158	Y
F042743	Metagenome / Metatranscriptome	157	Y
F057861	Metatranscriptome	135	N
F065449	Metatranscriptome	127	Y
F067435	Metagenome / Metatranscriptome	125	Y
F068737	Metatranscriptome	124	N
F086568	Metatranscriptome	110	N
F090441	Metatranscriptome	108	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0194239_10000036	All Organisms → Viruses → Predicted Viral	1422	Open in IMG/M
Ga0194239_10000294	Not Available	844	Open in IMG/M
Ga0194239_10000547	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales	688	Open in IMG/M
Ga0194239_10000568	Not Available	680	Open in IMG/M
Ga0194239_10000869	Not Available	603	Open in IMG/M
Ga0194239_10000918	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Pyrocystaceae → Alexandrium → Alexandrium monilatum	593	Open in IMG/M
Ga0194239_10001087	All Organisms → cellular organisms → Eukaryota → Sar	564	Open in IMG/M
Ga0194239_10001198	All Organisms → cellular organisms → Eukaryota → Sar	549	Open in IMG/M
Ga0194239_10001291	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	537	Open in IMG/M
Ga0194239_10001320	Not Available	533	Open in IMG/M
Ga0194239_10001340	All Organisms → cellular organisms → Eukaryota → Sar	530	Open in IMG/M
Ga0194239_10001507	All Organisms → cellular organisms → Eukaryota	513	Open in IMG/M
Ga0194239_10001527	All Organisms → cellular organisms → Eukaryota → Sar	512	Open in IMG/M
Ga0194239_10001645	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Oxyrrhinales → Oxyrrhinaceae → Oxyrrhis → Oxyrrhis marina	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0194239_10000036	Ga0194239_100000361	F042154	GAEMRGVFPVVFDYVVKYNIKDAMEHQGKAKMKFDGKTPAKKFEMSFAPKTGTPMDLIWNMDFSSGFKYDYDFKMNAVTMEKGNGEYKWVNNGQKFELMTKDTFIVTKQSPFHWMNTMVTGGREWTKMEHTRNIFFDKVNKAQMINKMKIEEHNILDGQTWYHIKYDNTAPKTAFLFTYLPYNMEHPWTYEGGREHTANGGFTLTHKITHGENVIQEAEWVFDVKANDGSKFEMEHLHKMTMTEESPFYGMVYWYTGRYGKNVERKMTVFFDKINKSILFVPKMKMDTTLAIDGEKISEFVFDNTQAKKHIKFFYSPDAYTKDYLYEEEWEYPGFSGIKCKIDFKRGGVSTYNYDGEYSWVNNANKFEVKSNEKANQEANGPYYGMDYWLVGTYWKSAVVTRTFTYEKKNRNFLLGKIHFESKVMADGERFYEAKLDTRATPYTMVWFHKPVRALYPTPRDLTGQDEMTVTAW
Ga0194239_10000294	Ga0194239_100002941	F090441	TLSFLDSLALGAPITRRVIIGCQFPDAASYRKNDSDMFRSHSET
Ga0194239_10000547	Ga0194239_100005471	F008082	GAKDAIESAKSTVQFAPMLAVLFIATRMRALQMTDNKGAPQGWVQDGMYLATWSIMIQFMMCLIMPFFLGHKYTPDTLDGEQKPGENDNVSNQYGAMAVTFVRYCALIALLGGVTTVTIGVFMMTPETANGRGAIPVIADGTLPVDLAPEPYGVNDMPGAKKAMKNVGETVGTGVNTVNEAGETVTAPVADVAAPVTGF
Ga0194239_10000568	Ga0194239_100005681	F065449	GKAEAEGELETAEKNLADDKKHLADLKHECMAKAEEFGTSQSERGDELAALQKAKTILEEKTGGAADRTYSFVQLKVETKSRTRSRDEEVKDRIFALVQGLAKKDGSKALSLLAQRVQAAALMGADPFAKVKGMIQEMIEKLVAEAEKEASHKAFCDKEMSETKAKRDDKQSDLDDLNTKIDKATTKIAKLTEEIATLQAEATAMRDEEAAAWAAAKADFESGIEG
Ga0194239_10000869	Ga0194239_100008691	F086568	PPTHFQTQMIKTTIAILFCVASAAASVDHRGLEVLVERDGEIEGKLVGEGNRYPGESCEPGEGQCAISSCNAETLTCEEAIAEETEDAYGDPEIEFEHPEPTNVQIVEDDRQLRSARHYARKYDRQVRRANKHAFRASKGGWGHSYRGQQHQLYKAAKHDAKAQYAANMYAAKTGGLGLYGRQLRSARHYARKYDRQVRR
Ga0194239_10000918	Ga0194239_100009181	F026772	CECINKNQKGPDCECINKEPVVLAKTEKKGPDCECINKNQKGPDCECINKAPVVLAAKKGPDCECINKNQKGPDCECINNNPASFVQLRADPAPEDQLAKEMTHDLEMNFNKIAPFGKEDTAKELQDHAAKTQDTLVDAVENAEVAEIKRAVFRALTRLRAATIKEFDTIARLETQAIDAYNDAHHYRAENPLSHLH
Ga0194239_10000955	Ga0194239_100009551	F000351	REALAYGVYLHACHRSELMIFTVLLGLAAAVDMHQKVTPVQKVIQLLQGMAEKGKKEKHEEQVQFAAYKQFCDDTTVEKQRAIKEATAKMEQLVAAIQKAEADAATLAKEIAQLDEDISVYEGDKKAATEVREMENADYLTTHKDYSESVDALERAIATMKKQDYDRAQLLQVNKLEIIPEHAKKVISAFLSQGE
Ga0194239_10001087	Ga0194239_100010871	F067435	GMQTGRAHTTQLSLMASALTSKAVDFSKITEQIDGMIDVLGKEQTDDDTQKAFCDEEFTKSAAEKKDTEDKLASLAASIEEMSATVATLKSEIETLTAEIKALDKAVAQATEQRKEEHAVFLQTQAEGSAAVQLIEAAKNKLNKFYNPTMYKAPERRELTEEERIAVANGAVDPREEEAVAGQGIAG
Ga0194239_10001194	Ga0194239_100011941	F000070	GNAKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKAKITSDTDQAVNALNGRIDFTNKDLAATQESLHTTQNSLSDCFNEVAVVRSDLERNVADTEARLKNELRQKQAELRSAEASRRLGALDLRMSGVQGGLGEHKRDILKLREEVNGP
Ga0194239_10001198	Ga0194239_100011981	F034477	GTEEQSKRDQAAKVLFTAAKKYANPKLAAIASSMRLDAFTKVKAAIDEMIAALLKEKEDEIKHKDFCTDALNKNARAQELKARDISELEAKIADLTTNIDELTKAIATLESEIAEMNTQLKRAGEDRELENKDFQQTVSDQRETQALLQKALGVLEAVYAKKESFVQKKKEPAGPPPPPGFK
Ga0194239_10001225	Ga0194239_100012251	F042743	TGIREKEHSDFVESTGEQKADLDAMTGAIAALEKGMGGAFIQAHSGAASRVQRVVKTSANVDDFERNEIMSMLQGKNPFGDYGARSGEIVGILKAMKDEMDKDLGGAVWTEEEAAKAFEGMAAAKKAEIQAASEAIEGKTVRSGELAVETTTTADEIEDTTKEMSDTQAFIANLASMCET
Ga0194239_10001241	Ga0194239_100012411	F000023	GNNKGEINHVRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKNHDSWMEDVSNTLQQMQEKEENLTEDLINLKNEMNAKLDTKVDNVAWKEANDDLDAAIKTVRDMVSSLRLDVDARRRKVDEILATIRHDITAVETNLEESKA
Ga0194239_10001291	Ga0194239_100012911	F068737	GGFGLFSVGGTGRSAEESVVTPADMTGGMCFMMFMSGAEEKLSCIERTACEDPYLATDYLTAAKMIYKGYKLVGMHIADKYATVMNSVNDALEYGKSGAECSAKYHW
Ga0194239_10001303	Ga0194239_100013031	F000023	GSGAQTDAQVLKKVSTRLQDFEAQITAQLSNMQSDFDKKLSHLNRGSSGVKGMDTTTSVAGIETVVEDLDALKYDVGELKDLLNNNKGEINHVRRIVLACERDMEDFTAAMDAVNVDLDEMRARVDATHSIITSRQRVEATMTAEISTMRLDIGDIQEALKTTTRGWRTCRTRSSRCA
Ga0194239_10001320	Ga0194239_100013201	F003621	TKIAKLKEEITTLQKELAAIAKLQKEATEMRAEEAAAWAAAKADFEAGIEGVQMALQVLRDYYAEKDAVLLQTEKASGAASGIIGMLEVVESDFTKMLAEGTAKETMAVDSYEKLTQDNKIATTEKSTAMKYKGKDQKETEAALAGLKEDREGTEKELASILEYWDKLQPMCVAKPE
Ga0194239_10001340	Ga0194239_100013401	F034476	ENNNFHAAKEDDVKAIGLLEEAIAAMSKYSENNAFLQKKHNKQPEMEVSPDQAPDAQFSSKGKHANAEKGIVSLLTQIKENLENEVGLAEKSEAKATEEYDAMKASADAQVEAYDKQLTDLAASIAATDAEIEADTQTKTDTEGEKTATTEYLASIKEQCDWIEGAFQKRVDARIK
Ga0194239_10001362	Ga0194239_100013621	F000351	LAQRVFFTQPKMKVAFFLGLVVATEVTPVQKVIQLLNGMAEKGKKEKHEEQVQFAAYKQFCDDTTTEKQRAIKEATAEMERLSASIQKAEADAATLAKEIAGLDEDISVWEGDKKAATEVRELENADYLTTHKDYSESVDALERAIAVLKKQAYDRKQGESLAQVAQLQLIPEHA
Ga0194239_10001386	Ga0194239_100013861	F000351	LAQRVFFTQPKMKVAFFLGLVVATEVTPVQKVIQLLNGMAEKGKKEKHEEQVQFAAYKQFCDDTTTEKQRAIKEATAEMERLSASIQKAEADAATLAKEIAGLDEDISVWEGDKKAATEVRELENADYLTTHKDYSESVDALERAIAVLKKQAYDRKQGESLAQVAQLQLIPEH
Ga0194239_10001507	Ga0194239_100015071	F042743	GGAIAALEKGMGKSFLQANSGAVSRLQRVVQASAVLTDDFERNQILDLLQGKNPFGDYSSQSGEIVGMLKAMKDEMDKDFKGAVSDEDEAQSAFEGMAAAKKEEIAAASEAIESKTARAGELAVSVVTTADDVEDTTKEMEETQAFLANLASSCATKKKEWAERTKIRTE
Ga0194239_10001527	Ga0194239_100015271	F014384	GWEERQKARQEEIQACSEALAILSSDDAHDTFTKTFNFVQTRTESRETKKRDQAAKVLFKAAKQYANPELAALATKVRLDAFTKVKAATDEMVSALLKEKEDEIKHKDFCTDGINKNERAQELKARDIDELVAKIEDLTAQIDGLEKSIATLNSEIAEMQTQLKRAGEDR
Ga0194239_10001550	Ga0194239_100015501	F000075	GIKTNLIKIQMKFAAALIATVAAVDFEYMNEDELLAQLSSNLSSAQRSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK
Ga0194239_10001645	Ga0194239_100016451	F057861	GGAAKADFEQGLEGVRMALDVLRDYYASDDAFLQQPTGHTKATGASTGIIGMLEVIESDFSKMLAEGQATEDQAQKEYDTLTKDNEVATATKTTEAEYKTKDSKETAARLAGLQDDKGVAEKEYSAIMEYWEKLQPMCVAKPEPYAERKKRREAEIAGLKEALQIH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300018689: Eukaryotic communities of water from different depths collected during the Tara Oceans expedition - TARA_N000000852 (ERX1086441-ERR1007416)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences