NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300018938

3300018938: Metatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_039 - TARA_B100000091 (ERX1399742-ERR1328124)



Overview

Basic Information
IMG/M Taxon OID3300018938 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117946 | Gp0217186 | Ga0193542
Sample NameMetatranscriptome of marine prokaryotic communities collected during Tara Oceans survey from station TARA_039 - TARA_B100000091 (ERX1399742-ERR1328124)
Sequencing StatusPermanent Draft
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size205531014
Sequencing Scaffolds29
Novel Protein Genes31
Associated Families29

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED2031
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus tauri1
Not Available9
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationIndian Ocean: TARA_039
CoordinatesLat. (o)18.5839Long. (o)66.4727Alt. (m)N/ADepth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000200Metagenome / Metatranscriptome1633Y
F001319Metagenome / Metatranscriptome723Y
F002093Metagenome / Metatranscriptome594Y
F003423Metagenome / Metatranscriptome487Y
F003693Metagenome / Metatranscriptome473Y
F005911Metagenome / Metatranscriptome386Y
F008029Metagenome / Metatranscriptome340N
F018550Metagenome / Metatranscriptome234Y
F021314Metagenome / Metatranscriptome219Y
F023949Metagenome / Metatranscriptome208Y
F026894Metagenome / Metatranscriptome196N
F028358Metagenome / Metatranscriptome192Y
F028521Metagenome / Metatranscriptome191N
F041790Metagenome / Metatranscriptome159N
F046429Metagenome / Metatranscriptome151N
F048369Metagenome / Metatranscriptome148N
F054086Metagenome / Metatranscriptome140N
F058202Metagenome / Metatranscriptome135Y
F060038Metagenome / Metatranscriptome133Y
F062805Metagenome / Metatranscriptome130N
F065835Metagenome / Metatranscriptome127N
F066837Metagenome / Metatranscriptome126Y
F072425Metagenome / Metatranscriptome121N
F082267Metagenome / Metatranscriptome113Y
F087146Metagenome / Metatranscriptome110N
F090441Metatranscriptome108N
F091884Metagenome / Metatranscriptome107Y
F102591Metatranscriptome101N
F103879Metagenome / Metatranscriptome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0193542_10002042All Organisms → Viruses → Predicted Viral1804Open in IMG/M
Ga0193542_10004693All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED2031305Open in IMG/M
Ga0193542_10005253All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus tauri1250Open in IMG/M
Ga0193542_10006625Not Available1145Open in IMG/M
Ga0193542_10007514All Organisms → Viruses → Predicted Viral1090Open in IMG/M
Ga0193542_10009111All Organisms → Viruses → Predicted Viral1012Open in IMG/M
Ga0193542_10009224All Organisms → Viruses → Predicted Viral1008Open in IMG/M
Ga0193542_10010146Not Available967Open in IMG/M
Ga0193542_10010273Not Available961Open in IMG/M
Ga0193542_10010593All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium948Open in IMG/M
Ga0193542_10012804All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria866Open in IMG/M
Ga0193542_10014571All Organisms → cellular organisms → Bacteria → Proteobacteria812Open in IMG/M
Ga0193542_10015932All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata778Open in IMG/M
Ga0193542_10016152Not Available772Open in IMG/M
Ga0193542_10016512Not Available764Open in IMG/M
Ga0193542_10017938All Organisms → cellular organisms → Bacteria733Open in IMG/M
Ga0193542_10020840Not Available680Open in IMG/M
Ga0193542_10021520All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos669Open in IMG/M
Ga0193542_10021852Not Available664Open in IMG/M
Ga0193542_10022486All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage655Open in IMG/M
Ga0193542_10025174All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium620Open in IMG/M
Ga0193542_10026570All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.604Open in IMG/M
Ga0193542_10030025All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos568Open in IMG/M
Ga0193542_10031493All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium555Open in IMG/M
Ga0193542_10034873All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium527Open in IMG/M
Ga0193542_10035126All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium525Open in IMG/M
Ga0193542_10035243Not Available524Open in IMG/M
Ga0193542_10036916Not Available512Open in IMG/M
Ga0193542_10037551All Organisms → cellular organisms → Bacteria508Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0193542_10002042Ga0193542_100020422F062805MCIIKIIQDGDISNNEIESLWKNNPHGGGIGLIDNDLNLRVPIRTHEYELFRDELQKLLKEQNFKTLVFHMRLRSKGSLDTINVNPIYVNEKTVMFHNGTLSGFDNDFYSDSLMYVFNVLHSIKELDIENKNHIKQIKDSLLNNPSRLVFLQEGKAEPLIINNQNIGYWLKNSKQWSSK
Ga0193542_10004693Ga0193542_100046933F026894RVQTDKNVVQKNNRVQSPVAGVSRKKGNDSNRVKLTSDDINTAKTFGIDINDEAALKRFAKEVKSFSSNT
Ga0193542_10005253Ga0193542_100052531F087146VDAFDRKVTFTLDASWIDQRLRAANPDFFTSPISDGFIVRHNYKSHLFFPRKNMVKMTRIGLRKWTVTTRDVNYEYGFALGNEAGEILREIGPWVTTKQHGPKSGNGESMDACTVTFWPYRNRLIPQKPNAAPGPLNVTACFASCTKTCELPNAPTPLASLDASQYSGGNTWGNAQISCNLGSQTTYNSTMNGMYINGNRQSVITCPYEIGPARYPNLTMEVVFQLDTTYDPTASYGWIFGHDDGGYDRSFIISDTRFGGGIGSGIGAVYDSGAATPSNGVWHHGLAVFRQGIVDGSYTALDGAISPVKATANNNEGEPNFTVGGLANDFGFPHEMKGWIRYLNFYDGALDESQIEAMYVRNTPWP
Ga0193542_10005789Ga0193542_100057894F000200GNGHVFEEFVEAGTTTSRCGCGANATKIVSATRHMLDGSSGDFPGRHMKWVKEHEEAGRKGRESQER
Ga0193542_10006625Ga0193542_100066253F062805MKGGVMCIIKIIQDGDISNNEIESLWKNNPHGGGIGLIDNDLNLRVPIRTHEYELFRDELQKLLKEQNFKTLVFHMRLRSKGSLDTINVNPIYVNEKTVMFHNGTLSGFDNDFYSDSLMYVFNVLHSIKELDIENKNHIKQIKDSLLNNPSRLVFLQEGKAEPLIINNQNIGYWLKNSKQWSSK
Ga0193542_10007514Ga0193542_100075142F028521MATYTSGAINEVLVGTGVLYVADRTASGLAFPGDDGSGNWQSVSTASAAWRDIGYSEDGWTLEMDRTFEDILVAEEIDPIKTIKTAQEARLMGELSQASLANLSVAMGQIDSYVSEDDSDFAAGYDVVKAPITDSFSEMAALLIAEGPGGADRHMQMPRVVSVGAFSMSHAKAPQKVVIATEFKLLVPDSTFNVGATGGKNHLFKIVDNTNDSTTFDVN
Ga0193542_10009111Ga0193542_100091111F028521MATYTSGAINEVLVGTGVLYVADRTASGLAYPGDDGSGNWQSVSTASAAWRDIGYSEDGWTLEMDRTFEDILVAEEIDPIKTIKTAQEARLMGELSQASLANLSVAMGQIDSYVSEDDSDFAAGYDVVKAPITDSFSEMAALLIAEGPGGADRHMQMPRVVSVGAFSMSHAKAPQKVVIATEFKLLVPDSTFNVGATGGKNHLFKIVDNTNDGVQFDVN
Ga0193542_10009224Ga0193542_100092242F003423MNEFDAPDNGVKQMRETIDRKDDAIKKLEAELASYKDKEIDNVFGSLGLSTDKGFGKALKQVYDGPVNTESISQFAKDEYGWEPTGQVQEVTQPEPAPQVQDDARSRVAALDANSNSDVPMDINDELVAALKGASVKDSLRAKLTIMDNEKQNK
Ga0193542_10010146Ga0193542_100101462F065835MTEENMDTNEGIKGLREKLKSVEQENKELKNVVKTSLFKDVGLDPNSGTGKMAFDLYDGKPDTAELGTWLKETYNIDTEVQQNNEVAAAKIADSDSKLETIQQNSMATQPEDWTQKMQDIISSDQTSVKDSLRAKLALQEINKNN
Ga0193542_10010273Ga0193542_100102731F090441LATLSFLNSLALGALITRRVIVGCQFPDAVSYRKNDCNMFRSHSET
Ga0193542_10010593Ga0193542_100105932F021314MEENTQIDATEAVDESTDGIKQLREEYKKLKAENKQFKADAMNNALGSLGLSADKGIGKAVTKLYDGDVTVDAIKEFVAQEFGEVSNSEQPSATPEVNNNVVEAQSRVEQLNKIGVNAEPVDVGQEFLNFVKDSNTKPKDSINAKLRMIETLKEQNK
Ga0193542_10012804Ga0193542_100128042F082267MDFYDEGSSWQIITFTVLTLGALIFQIGTKFDQWKNPEKYEFDWKVGLEEE
Ga0193542_10013751Ga0193542_100137512F023949MSKENIGKFVNSLQKGDNAQAGEDLKNALADKVSSALDDAKTDVARSVFTGQQGADALEANVFSGNDISAETPATPEASSDEVAQ
Ga0193542_10014571Ga0193542_100145711F046429GIAAMRAGGQITDQEIAIVEGDLIVAKNVVTEARRIIGKVGDILVESTKRQVLKG
Ga0193542_10015932Ga0193542_100159321F041790GTLGPSAMPTAAPTAAGALSLCARDDGTKMAVVSGSLTFGATRDDDDEEGCLMRSGDDRFSSAYATAAPKTDATISARIMSEGSIRRDYGLLLRVTDDWDDSFRYQPRAGYRCTVNTGRDGKADSTLSVEVLREDGSRSTVASYAPAFALEPGTWYTVSASAVGNRITCQIMRGDWVLGSAEAVDDTYGDGYFATWNYKDDSGPHWWGDLRVVDAPPPAARRLRGSR
Ga0193542_10016152Ga0193542_100161521F058202MKSLRQIVELKKIDLVPDPELQAGTVSNYANPKSDAERRFVEKHVDSIQKTLHPAFKNEAEQKAVFSGTVEKDKTHDNAGAGHYQDGEDAEVYEAAEAAVDFVRDNLTEDNLKAYDELLDNDPDAAVEFAMETVQEMAG
Ga0193542_10016512Ga0193542_100165121F005911ARGVVKKIIRQTKKKGETMCLKDRLLHMLKSKKGNALLLATAGAIAATFSVYFFVSLTTLSEDSKQRVAHLYNAYQMGQSLKGKIDGADINQARLGGKTEDDIEAPIDDVFHNGKFISLKTMVKKAIIIAADDPTATARGGVDTPYDLVNSGVLIKYADSAGAVITPTTTGSGTATIVADVQLFVNLAGTPDADSNSPYATGEPFYYILMDADTAGLTTDDHTVDLVQFPAGILATNDGGPQAEVSVVLPQDDE
Ga0193542_10017938Ga0193542_100179381F008029LHKGKTLNLVGLKELSELLDVSYDTLKVWKNRNRLPDPFQVISGTPVWDWDESEEDFRSIQKNENSGRPRKPKISIAGGLVEIDLNENKKDKDGNVSIRVMGKSFVDIQTESAESNSKSKNVSIRVLGKKVVDINTDDFIEVDKEDKSSENSXSKN
Ga0193542_10020840Ga0193542_100208402F072425MNIEFSSSSMLQSPIVVDTEAQTAVLTYNNGKEYTYSINDTFVSDLQETINNESSVGKFILAARSDQRLQQVTV
Ga0193542_10021520Ga0193542_100215201F103879PFTKETVYHASADALVTWGVFDLLSEFAFFSQMNRKLQGTQNFVIDSQTCYDTYAHEFAEQLGDRLSPYGHHTHLSELTVGLNNTSLNLRLMTHFRRVVQKDKTTVGIGKSWVSTTRSGLSRIVDSRGALKHKREKETRLSLRNWSYRQELALDRRNTYWRERKKMRLYSIEYNLKNVTDTDHNQNSRVTRLYFRDALIESRQKRQLRVSLEPSTYDTFATR
Ga0193542_10021852Ga0193542_100218522F048369MKEDRDSFIEKLADNTPHEGQFDKLKEAEVHDAEEDLVAGKTFKKLKDEVKRGEK
Ga0193542_10022486Ga0193542_100224863F066837RVTDLVSDILAGNNADAQQKFNDEMTARAQDAVDGMKAGIATNVFDKHVVDPDMEPQGVSLEDSLVDIDTTTGRPVEEPTEGETNEDI
Ga0193542_10025174Ga0193542_100251741F018550AYYNDTNGDGSGSTQVISFATISGALKRMYDNHAPMTQPVLCVSPKQLLDLNNELVKGTVDIAGAILPRDRSVAGVDIDTVITPFGSIGLMVIDPDIMPDNTAFILDLAYIQPVFTNIPGYGTVFVRDIDQDANARIGKAIYMEMGFEFGPPSYHCKIQAVS
Ga0193542_10026570Ga0193542_100265701F002093MAYDGTLPAGGHGNFVSPNTAHEADGVEVDFITVDYISAMNAEVTHPLASANTAGLQLSMEAIQNQGVNILGKGVLSNSNTEQTYMVRRDSLDTISSTTTVAAIQAAVRALNALTPDKVTATISSATAADRDMGDTSVGA
Ga0193542_10030025Ga0193542_100300251F102591PLLAAYNGFYGVTLYHNWVTYYGPKGIMPYFLKTEGPVALMAWRMLGCLLLGITYGLLTAGPKDKTALKIATVGQAMMLPLMAMAGFGTDAATYAQTMWKTQLVVHAAMTYVGYSASQPTKTRSSSRRR
Ga0193542_10031493Ga0193542_100314931F003693GRLGWNSTSTLFFCYSKEDMIKSKLALIDVSADASNSLGVQTEGMLLCGIQFPAAMTGSNITFDFALDNSTWVDVKETDGTDTSYTVSAGDVLRVDPSGWAFASNGYIRVTSDGTEAADRSIILHFRHS
Ga0193542_10034873Ga0193542_100348731F001319GLGIGYAIGDNKXKKLWSIILLCGVVFAQLPQPTLVGQDDLKVPTLSINNFVNQAEIEGLEDTRVFLGITNILTENVMDSRYDLVEQDSDFELTARVIYLGRPRTATTFLGLFRRETTTTEVRVVVELKNKKTGVVRTGNGTGTIDREISSTGFQINEELPFDRSELGGALKEAI
Ga0193542_10035126Ga0193542_100351261F028358HAPMSQPVLCVSPKQLLDLNNELVKGTVEAAGAILPRDRSVAGVDIDTVITPFGSIGLMVIDPDIMPDNTAFILDLAYIQPVFTNIPGYGTVFVRDIDQDANARIGKAIYMEMGFEFGPPSYHCKIQAVS
Ga0193542_10035243Ga0193542_100352432F054086MDENKLEVTIREATNGWIVELNREGETIEYIFTRPNPAINLVRKVMKGELDPFNEGEG
Ga0193542_10036916Ga0193542_100369161F060038MAYALDNPIKKISQMGDTNSMWYYADGDAIGTIDDNE
Ga0193542_10037551Ga0193542_100375511F091884GAFCWVGHGTYTWSIGYEPNIVHATRCVRKAKRDYGLKGWQIIPVSIFDIEDTEHWAFDGGTLVDTDTQDKNSEDYKQRHLYHEYAGCKSLKKIEDLEVVS
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