NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019375

3300019375: Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 1, Penicillin and Streptomycin



Overview

Basic Information
IMG/M Taxon OID3300019375 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118397 | Gp0213382 | Ga0187898
Sample NameGoat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Alfalfa, Gen0, Rep 1, Penicillin and Streptomycin
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size523140507
Sequencing Scaffolds18
Novel Protein Genes20
Associated Families8

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → Methanobrevibacter smithii1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix6
All Organisms → cellular organisms → Eukaryota1
Not Available5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_1201
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E21
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium FB20121
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Salix → Salix suchowensis1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDetermining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: California
CoordinatesLat. (o)34.4148Long. (o)-119.8405Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003381Metagenome490Y
F046107Metagenome / Metatranscriptome151Y
F059515Metagenome133Y
F060488Metagenome132Y
F061388Metagenome132N
F081965Metagenome113Y
F086383Metagenome / Metatranscriptome110N
F100155Metagenome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0187898_1002582All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → Methanobrevibacter smithii9542Open in IMG/M
Ga0187898_1010802All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix4776Open in IMG/M
Ga0187898_1019997All Organisms → cellular organisms → Eukaryota3466Open in IMG/M
Ga0187898_1077682Not Available1437Open in IMG/M
Ga0187898_1096893All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix1205Open in IMG/M
Ga0187898_1133061All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120929Open in IMG/M
Ga0187898_1173697Not Available746Open in IMG/M
Ga0187898_1191444Not Available690Open in IMG/M
Ga0187898_1192709All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix687Open in IMG/M
Ga0187898_1193624All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2684Open in IMG/M
Ga0187898_1204467All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium FB2012655Open in IMG/M
Ga0187898_1210657Not Available640Open in IMG/M
Ga0187898_1228133All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix602Open in IMG/M
Ga0187898_1237273All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix584Open in IMG/M
Ga0187898_1243354Not Available574Open in IMG/M
Ga0187898_1255374All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Salix → Salix suchowensis553Open in IMG/M
Ga0187898_1262196All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium543Open in IMG/M
Ga0187898_1281643All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix515Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0187898_1002582Ga0187898_10025821F086383MTLHIALDGIYVNVNHMIIQKLAEYLTQNSYTVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSIAWNNQNFSNYDIVIWQTSILSSYVFHTDQNVKPSFIKSINRFVPNMDIIVVVQPLEDKNQIIQKFNEVIQQFDNVYPVNFVYGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAKEEQNRLNFRNYYKRYKDTMSEAQKGALGSKGANLHAHANTDPEVEARLISNEKKRLGL
Ga0187898_1010802Ga0187898_10108028F046107PFLTNKKVIKPRSNIFKSDSVVSTKLSPDSSFNELLRRDSPFVEIDDDPVLSLCLISTMSMLLVKFGILEYLSNNSSNELLNDSYCAS
Ga0187898_1019997Ga0187898_10199973F046107MHFRKLYYEGIFPFLTNKNEIKPISNIFKIDNVVFTKLSQGSSFIELLGRDSPFVEIDDDPVLSVCLISTTSTLLVKFGNLEYLSNNSSNELLMIGIA
Ga0187898_1073909Ga0187898_10739092F086383MTLHIALDGIYVNVNHIIVQKLVEYLTEKSYTVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSITWNNQNFSNYDIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLGDKNQIIQKFNDVIKQFDNVYPVNFVNGAIDLTFKETIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAK
Ga0187898_1077682Ga0187898_10776821F086383IFPLEDEIIQSILNSYDLTFSEKALLTALDRSITWNHQNFSNYDIVIWQTSIISSYVFHTNENVKPSFIKTINKFVPAMDIIVVVQPLQEDNQIIQKFNDLIQQFDNVYPVNFVYDGVDLTFKEVIETVFEVLPTCNWCGRLFTKNTHFKKYCSNNCKDYAKEEQNRLNFRNYYNRYKDTMSESQKGALGSRGANLHAHANEDHEVEARLISNEKKRLGL
Ga0187898_1096893Ga0187898_10968931F046107YAGIFPFLTNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELQGQDSSFVEIDDDPVLSLCLISTTSTLLDKFGILQYLSNNSSKKKYFNIYFISSYYCYIKKL
Ga0187898_1133061Ga0187898_11330611F061388IRALWEQYAAQFRATNMRRDEGAFYSPRDDSVHLHIPSVARGDAISTPYSVLFHEYGHMTDYLIARTHNQGNYSAYSDLFQGIGSDGKAIIRSGSSGGLLGRTAKDELEGHLARMRRQNPNLNRQQAARALVSEANSKYSYRDRSDISDMFEGAGLGIAHPLGAGHGLDYWSSRGNSKEIFAEIISAETAHPGSLKAIKEYFPRTYQVYQDMMKARKKR
Ga0187898_1173697Ga0187898_11736971F086383ASKSYTVKTIFPMQDETMQHILNSYDLTFSEKALLSALDRSITWNHQNFSNFDIVLWNTSIISSYAFHTTAEVKASFIKSINRFFPAMDIIIVVQPLQENNQILDKFSSLIQQFDNVYPVNFVDGGVDLAFREAIETIFEVLPTCNWCGRLFTKTIHFKKYCSNNCKDYAKEEQNRLNFRNYYNRYKDTMSEAQKGALGSRGANLHAHANADHEVEARLISNEKKRLGL
Ga0187898_1191444Ga0187898_11914441F086383MTLHIALDGIYVNVNHIIVQKLVEYLTQKSYAVKTIFPIQDESIQSILAGYDLTFSEKAMIAALDRSITWNNQNFSNYDIVIWQTSILSSYVFHTNESVKPSFIKNINRFVPNMDIIVVVQPLEDKNQIIQKFNEVIQQFDNVYPVNFVYGGVDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCCSNCKDYAKEEQNRQNFRNYYKRYKDTM
Ga0187898_1192709Ga0187898_11927092F046107MCFGKLYYAGIFPFLTNKKEIKPRSNIFKINSVVFTKLSPDSSFIELLERDSTFVEIDDDPVLSLCLISTTSTLLDKFGILQYLSNNSSNELLI
Ga0187898_1193624Ga0187898_11936242F046107IFPFLTNKKEIKPRSNIFKIDNVVSTKLSPDSSFIELLGQDSSFVEIDDDPVLSLCLISTTSKLLVKFGILQYLSNNSSNELLMIGIVYYKKNYTLLVSVIRLCPLLL
Ga0187898_1204467Ga0187898_12044672F100155MTLNEMIFKRKSCRSFSSIPVDAAIIEPITAFPLKPLYPDIKVHWDIVPRNQVKCICPWTTPQLITIYSEE
Ga0187898_1210657Ga0187898_12106572F060488MRSLVVKKLKAFRPTVPSVILFLLASYRTICSGDSIQLVGVCAAIVPFICQFKDFNVNKDVPAVKDVISSYILNLILMALYLGWILLLTWAGQRFLPSYIPNPYFKDMLFIAIAADVVFISSVIPVCRELTPFQRMIPGLILTNA
Ga0187898_1213041Ga0187898_12130411F086383MTLHIALDGIYVNVNHIIVQKLVEYLTQKSYAVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSITWNNQNFSNYDIVIWQTSILSSYVFHTDQNVKPSFIKSINRFVPNMDIIVVVQPLEENNQIIQKFNEVIKQFDNVYPVNFVYGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYA
Ga0187898_1228133Ga0187898_12281331F046107MYFGKLYYTGIFPFLTNKKEIKPRSNIFKIDSVVYTKLSLDSLFIELLGQDSSFVEIDDDPVLSLCLISTTSTLLVKFGILQYLSNNSSNELLMIGIALVKNSAKPTIFG
Ga0187898_1237273Ga0187898_12372731F046107MYFGKLYYAGIFPFLTNKKEIKFRSNIFKIDSVVSTKLSPDSSFIELLGQDSSVVEIDDDPVLSLCLISTTSTLLVKFDILQY
Ga0187898_1243354Ga0187898_12433541F081965NKSYRSVPTRRGIENAKKLKNTIMASFEAKIVWKRPRKRENKNYHFVSFLPDE
Ga0187898_1255374Ga0187898_12553741F003381INLVCPSVCDADQPKNTSKDPLHVPNGPMTPSRTKALKEAINALVLKVSTRSELQGPLEYQEEILVHLIHVQEGSNTNLFGP
Ga0187898_1262196Ga0187898_12621961F059515TTQAIQAVGTLEVSESEDKPFTDMYGYEFCCKIVDATYTIIKAEDLSEDMALWQKIANTDVVNDIYKMYDYVNFLCAWNTYFVNSYTDENGVTQPGYYLYASDAENFIYKDGAQYNYGYKEGYFDSIVAEIEAVDKTAFADLVANVRKAEALANKALGELENKNYTSEYKYAEKFGKEDW
Ga0187898_1281643Ga0187898_12816431F046107LENTMYLGKLYYAGIFPFLTNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSPFVEIEDDPVLSLCLISTTSTLLVKFGILQYLSNNSSNELLMKGIARAAVNVG
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