NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019715

3300019715: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_2-3_MG



Overview

Basic Information
IMG/M Taxon OID3300019715 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0129088 | Gp0217632 | Ga0193966
Sample NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_2-3_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size106166789
Sequencing Scaffolds42
Novel Protein Genes45
Associated Families41

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1
Not Available24
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biomeriversediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001488Metagenome / Metatranscriptome686Y
F004052Metagenome / Metatranscriptome455Y
F004520Metagenome / Metatranscriptome434Y
F004928Metagenome / Metatranscriptome418Y
F008114Metagenome339Y
F008361Metagenome / Metatranscriptome334Y
F008424Metagenome / Metatranscriptome333Y
F016025Metagenome250Y
F023596Metagenome209Y
F024115Metagenome / Metatranscriptome207Y
F026012Metagenome / Metatranscriptome199Y
F027186Metagenome / Metatranscriptome195Y
F027522Metagenome194Y
F029111Metagenome / Metatranscriptome189Y
F031452Metagenome / Metatranscriptome182Y
F037736Metagenome / Metatranscriptome167Y
F042914Metagenome / Metatranscriptome157N
F044506Metagenome / Metatranscriptome154Y
F048318Metagenome / Metatranscriptome148Y
F053305Metagenome / Metatranscriptome141Y
F053659Metagenome / Metatranscriptome141Y
F062271Metagenome / Metatranscriptome131N
F064226Metagenome / Metatranscriptome129Y
F065253Metagenome / Metatranscriptome128Y
F068865Metagenome / Metatranscriptome124N
F071910Metagenome121Y
F073262Metagenome120Y
F073570Metagenome120Y
F076890Metagenome / Metatranscriptome117N
F080094Metagenome / Metatranscriptome115Y
F085725Metagenome111Y
F086605Metagenome110Y
F087123Metagenome110N
F087134Metagenome110N
F088283Metagenome / Metatranscriptome109Y
F088919Metagenome109Y
F090242Metagenome / Metatranscriptome108Y
F090406Metagenome108N
F094948Metagenome / Metatranscriptome105Y
F103282Metagenome101Y
F104552Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0193966_1000720All Organisms → cellular organisms → Bacteria → Proteobacteria2397Open in IMG/M
Ga0193966_1005067All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1184Open in IMG/M
Ga0193966_1005121All Organisms → Viruses → Predicted Viral1179Open in IMG/M
Ga0193966_1006298All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1093Open in IMG/M
Ga0193966_1007426All Organisms → Viruses → Predicted Viral1033Open in IMG/M
Ga0193966_1007706Not Available1021Open in IMG/M
Ga0193966_1008094All Organisms → cellular organisms → Bacteria1003Open in IMG/M
Ga0193966_1008878All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium969Open in IMG/M
Ga0193966_1010799Not Available903Open in IMG/M
Ga0193966_1011868Not Available873Open in IMG/M
Ga0193966_1012015All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria870Open in IMG/M
Ga0193966_1013119Not Available843Open in IMG/M
Ga0193966_1014266Not Available819Open in IMG/M
Ga0193966_1016401All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis780Open in IMG/M
Ga0193966_1018017Not Available754Open in IMG/M
Ga0193966_1018066Not Available754Open in IMG/M
Ga0193966_1018098Not Available753Open in IMG/M
Ga0193966_1019377Not Available736Open in IMG/M
Ga0193966_1021506Not Available709Open in IMG/M
Ga0193966_1022564Not Available697Open in IMG/M
Ga0193966_1023205All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont691Open in IMG/M
Ga0193966_1031283Not Available623Open in IMG/M
Ga0193966_1036358Not Available592Open in IMG/M
Ga0193966_1037463All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → unclassified Anaerolineae → Anaerolineae bacterium586Open in IMG/M
Ga0193966_1037645All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.585Open in IMG/M
Ga0193966_1039920Not Available574Open in IMG/M
Ga0193966_1042419All Organisms → cellular organisms → Bacteria562Open in IMG/M
Ga0193966_1044411Not Available554Open in IMG/M
Ga0193966_1044937Not Available552Open in IMG/M
Ga0193966_1046480Not Available546Open in IMG/M
Ga0193966_1047121Not Available544Open in IMG/M
Ga0193966_1049502All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi535Open in IMG/M
Ga0193966_1049728Not Available534Open in IMG/M
Ga0193966_1052311All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium526Open in IMG/M
Ga0193966_1054608Not Available519Open in IMG/M
Ga0193966_1055928Not Available515Open in IMG/M
Ga0193966_1056253All Organisms → cellular organisms → Bacteria → Acidobacteria514Open in IMG/M
Ga0193966_1056373All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis513Open in IMG/M
Ga0193966_1057724Not Available510Open in IMG/M
Ga0193966_1058323Not Available508Open in IMG/M
Ga0193966_1059782All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes504Open in IMG/M
Ga0193966_1061061Not Available501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0193966_1000720Ga0193966_10007202F088283MKTTVPVLLTFLACVAGCATDGGVTGTYRPSCVAFEGNTIELTDNRFMWDKFTDEVSVDEAGNKIDPFPGFPVRGTYTIEDDVVSLVTDVGNLAAELHLVHRPDQVYLLTDAEYDAWQQDGTVPDCALLLGAGE
Ga0193966_1005067Ga0193966_10050671F090406MKYERNIVWWIIVLVGLASCSTTLTSVDEKGGNVYALPPTVVDQMLKDAMATEISTGTLRRGSTPYPSYLGEVTWGSLDKDTITASARPAKGRKLDGTVVDGYVFAVSRKGTAPATGQATVKRTYAKVQKADELTGTGAAF
Ga0193966_1005121Ga0193966_10051213F087123MNYFKSDILNQDIQWDWADDCQEKQYWNTWIPKKSNLKIITKLKREEMQMAKNELWDNLQDAIQFTRDQINLKRRQKRLAIKS
Ga0193966_1005702Ga0193966_10057022F088919MHVEEICLSANVVDLGPDQPPEDREQSAALEQTNGMRFCRSAFTLFNNHRLAVKTQGFMQHARDYTIDIGMLDPHPKRLFKIGWGYLLSCIALCAAAWFLGSISLAVCAGLTLILAIYRSHDRLVFYSQYGRVPLVVLFNRSPDRVTLASFTDVLVQHIKDAKTRYPAANEALSEELK
Ga0193966_1006298Ga0193966_10062982F001488MARLELTLNFPKSFQIKTFNVKSEKKLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWVYEVYINKVSTHNKFMSQKSQNLEPGEYITIKLAYRSSVSQEKK
Ga0193966_1007426Ga0193966_10074261F008424MEKKINILERLLYLTLIAGVCFFTGVFYTYYKIDQRLWNEEILKARDIETRYLNYPTKRNYKR
Ga0193966_1007706Ga0193966_10077061F004052MRILTMIVLFSLTALLCACDQRHAASDVDPELGLECCESHRAALPPGSQYEGIEKLAGSRLTIRVMNGVEVVTLACE
Ga0193966_1008094Ga0193966_10080941F023596ALLFVCAGVIALLFVALMFNMSRSMSEMTTYVGAISQDVSEMQNSIHTMNESMMRMEQSIHGLGQAFSQGSKQFQQMNPAGMMQQVLPGGGQRTR
Ga0193966_1008878Ga0193966_10088781F004928MAQALHSIDIQPDPTVEIVVHITETLGEQQREDLVTALEDNGGITTAEFCPLRYHLMLVRYDRDMYSSQDVLEYVKAQDVNAKLIGPV
Ga0193966_1010799Ga0193966_10107992F008361LVAVELNEATKELEKATLAVENAETSKARLDASIDLKKAVARLEGLNYLS
Ga0193966_1011868Ga0193966_10118683F027186MVTNSDFNFTNNETVILELPFSEHIEELRQRLFHIFWIILLL
Ga0193966_1012015Ga0193966_10120151F024115VRLTLPKILWFFAAVGIAWGLNTWRHSAAMHGLDAARDGDRGAAERWVDRALRESGCELHEAKGYISSSTTRQYVRRPDYVETFVEKLYAGGAPDIEVCDSNALGFRFAHYLVVTLPDDASQHEQIIADAQSFVRRDAVVYRGVTSTEVEEIVRRATLVGRHRVLVDMPAEAD
Ga0193966_1012789Ga0193966_10127891F076890MIGTRSVAAMLVAMGALGTSACSTLEVDDYCRYSETRSIRTADPESLALVLGVQAGRARQTPFVVIRSLSESTPGASVTLHTTPAAHPMPMGLDESRCAKVDWNTYTLAVDPDEWNAFWQDDRNSPFEIGIAFVEDFHPLPLSAFGAAILDTGSADPLVSCGCFWR
Ga0193966_1013119Ga0193966_10131191F064226MFRKRFQKGSPKVFDQLEMDVPYPYGHSTQRRNFKSGSKSPAWQRKEGK
Ga0193966_1014266Ga0193966_10142661F080094MKKQTQKDKKIRRLFNQQELKHIILKNIVKNENLSLNVKWNAISKLSNFSLSHKKTRFVN
Ga0193966_1016401Ga0193966_10164011F090406MKFERNVLWWIIVLVGLTSCSTTLTSVDGKGGNVYALAPTVVDQILKDAMSTEISTGTLRRGSTPYPRHLGEVTWGSLDKDTITASARPAKGRKLDGTIVDGYVFEVSRKGTAPATGEPTVKRIFAKLQKDAELTGTGAAFVEFAD
Ga0193966_1018017Ga0193966_10180171F027522TRLSGLIRYFYHKVTEANACFAVLIRATVNAGAALAVNNPSDSDKFAAKAAPAKLETSVFSVTNCY
Ga0193966_1018066Ga0193966_10180663F029111QTVSRTSIDENTSKEHQRNALPDILMTMSQIPDVNREFAEVGAMFRVLDVLRRSGRR
Ga0193966_1018098Ga0193966_10180981F104552MAICKASTLFVSRFACCQVWALLLLLGLLVPAQAAEALKPDALPQAQATLERLEEKLATARTATSQELKTLRKEIATVRSTAQDCLQQAEPQIEILDSELAIFQPEAPKDTQKKTVEETQPAEQPEAPFSPAIARQLQDLQSRKASLEGRIVTCKLVLLGSNNLDSKVDDYLRSLQARQLLTRGPTLVSVLQANLEERNRWLDFTEQLAVTSTGWDAIRPIHLAGAAAVGLLGFILGRIVPRRLRV
Ga0193966_1019377Ga0193966_10193771F087134MKMIEPKREDILKAWEVMYKLQHDGRRTHADVDKLNAAMRILDREQNRRLNNDRL
Ga0193966_1021506Ga0193966_10215062F090242MSRRFQKLNFRSKFEKDVSQHLHGFLYEPFTVPYTIHRN
Ga0193966_1022564Ga0193966_10225641F073262QLLATQSATNTTGTNLNALLNRPKALAALQNKCLMLVASLLAVCEVATAAALPMHWSKVHATLEPAEWAAHHARALDSAGSKMDKPAPLIPPPMASDLGNGRFAASSANNPNEGMSMFRIQPSCMPSRQEHQDRNRMFEVLVQGVGAASFKVQQMALINNEFELPQSAEELRGCINGCQVLLRAFLRVHSCLCVACKALAKEVDCITTAVVNTCLDKKVRQQISMLILTWTW
Ga0193966_1022922Ga0193966_10229221F026012LLKSNPIERDFLLQALHSIVISLQNNLSINFFDMWIYEIYINKVSTHNKFMSQKFQHQEPSEYITIKLAYGSNVSQEKK
Ga0193966_1023205Ga0193966_10232051F037736VPYRVQLDGLQILWLLANPLWTHGIGESGSKTITGWLLMGAADANHIWWLNINPPQADLLLHLNSYRIRHLPFDFLTASEF
Ga0193966_1031283Ga0193966_10312831F073262LWANAATPILANAALTTSYSALFDCLRAASANQAGPSVPSARRPLEIADDPTGHLVGAAQHHANNHLEGLRAPVGIATQLLALQSATNTMGTNLNASLNRPKAIATLQDKCPMLVASLLAVCEVATTADLPVHWSTVHAMLKATKWAAHHANALDSAGSKMNKSAPVTSPPLVQDMGNGHFNALSTNNLTEGISVFRIWPSCMPHCQ
Ga0193966_1036358Ga0193966_10363582F042914MLDKIKKAFTKKKPSAKKAEPKFNNMNDLQNGVAVNRESKSETKSETKSSLTFGK
Ga0193966_1037463Ga0193966_10374631F053659MNIDQPKPKRQNRTITLHLGNTLTEYETTYLSEAGIKALIDRVEIADSVDWGCLATGHKEGCPRQLQFTHHDSYTRSAKHFNGTQSEVVIHRVRCLECGAVFTVQPSFIIRYKRYDTDATEKLMTLLFITE
Ga0193966_1037645Ga0193966_10376451F031452GTFVLSPEQQAVRKYGFSEIKASGVPTVYHVGDVVNLPYASGEISSIEAIGLAWAAFSSGVVPET
Ga0193966_1039920Ga0193966_10399201F071910MRPIVVAALIAALLGAFGLALGRSAANAVERAVERHAAGVDRALSL
Ga0193966_1042419Ga0193966_10424191F073570INHIVDILNTTLHLMYQKRVPVGSLNNLQEENKETSHKFIIENNLIVYEKYDRHDKLISRVPWSPKSIDVKA
Ga0193966_1044411Ga0193966_10444112F085725VAVGFYLFFLGLRQRKRSPGLGFTHAGLALCGIIVLFTEIFTGPTDKLNNVAALFLFFAIVGGGMVFALHEENRPPSMAAVTAHAIMGLVGISLLIINLF
Ga0193966_1044937Ga0193966_10449371F008114MNLTINTKAFPDADPGMLQEMLGVLPYWVREYNILGTDMDIVGFMTERYGFGSLYQFKGDVQEDGTYSFPEDPDLPYVGKMNTPNGYVYFYQYAMLALPLPNGEYFVTRMD
Ga0193966_1046480Ga0193966_10464801F062271MSDKQQAVIQILHKEWALKQGYLVPSSKRQATSIKRQAASVNAEIYNDTDYKATSIK
Ga0193966_1047121Ga0193966_10471211F016025MKNIKNDKKENNLKENKIALSFREFENKKVLFRFFNTKREKSLSFAIYEKAKFSKNIKDAFNNDYRKVDIEYDTTKNNRFKK
Ga0193966_1049502Ga0193966_10495021F053659MSITEAKSKRENRTITLHLGNTLAEYEGTYLTEEGIQAVIDKVEIADSLNWGCLATGHKPGCPRQLRFTHHDSYSRWAKHFDGARSLVTILRVRCLDCGTVFSVQPAFIIRYKRYETDAVEKLMTILFI
Ga0193966_1049728Ga0193966_10497282F044506ASLTIGMMEQWNSGIMGSGMVQCWINGPATSGIDDKIKMVNILLKTNIPSFHPSIIPFPGQIRKSQKTSIFSVGCRNSETFN
Ga0193966_1052311Ga0193966_10523111F048318MSDIEISSSFDPRSALPRIADSKSKRIHKTLTVYLSTGLVPKTDEEIFVMATVENVSLVITASTTKPGYSDIEYSYELHPSELDCAWQREYTISTVLCGEDVIEDDVLAWGKDQHKVKFDDSGPCEPIRIRRVFEVETKVLDEDMF
Ga0193966_1054608Ga0193966_10546081F053305MLKKSLSLVLIAVFALSLIAVATLSAAETQKITGTVMSVNAETGEVIVKDDAGETKTLMADPKAEGAVDIKMLKEGDSVNVESDSDGVIKSIQAE
Ga0193966_1055928Ga0193966_10559281F094948MTAAWVLDCHYNIAHVLSLPQTITTRVGVANCWADLEILAQSEATCLPTHGHKSAASTSRKEVLQVFIN
Ga0193966_1056253Ga0193966_10562531F103282VRGESGISFTGLYICGVISLVMLVLKLSVMDAWSWWRVMLPVGLIVGFTVTNMVVAFIYLSFAHIPEKPDGDEAELLEPHTINVHY
Ga0193966_1056373Ga0193966_10563731F090406MKGERKTFWLIIALVGLASCSTTLTSVDKEGGNVYALPPTVVDQMLKDAMSTEISTGTLRRGSTPYPSYLGEVTWGSLDKDTITASARPAKGRKLDGTIIDGYVFEVSRKGTAPATGEPTVKRIFVKLQKDAELTGTGAAFVEFAD
Ga0193966_1057724Ga0193966_10577242F004520MVLIHVFVQLITNMKLTNKEKDEITWRVVDSLYEKLANELEYELQEHENFPETNDAYMDLYNEMTIKIVKYMRSELFQPMTNEDLK
Ga0193966_1058323Ga0193966_10583232F086605MMVDPWIYGTANPVYSDVDNYICPIAAVFAGGECGVAESVVSVSEIRTKTKN
Ga0193966_1059782Ga0193966_10597822F065253MYFHVEERRAWIRTQTHTVVYDRDPDYDRFAKDSTGAVKRMLRIWLAEDKGDKPYLRAYLGTVTFCFMGPSFRELYRLFHLTSRAAKAAGTEDKALRNRLIGLLRMYIQEEYK
Ga0193966_1061061Ga0193966_10610611F068865VMLLGVLIWLQARFAGAHSTITLERHTEVVDKIEGQLADGMTEKDRIHLQGPSDFISEVLARTNAIALAGWAVSVLGLLLLIAEVTRKKGSKTLEFTSQ

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