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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300020032 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118431 | Gp0208782 | Ga0182240 |
| Sample Name | Subsurface microbial communities from deep shales in Texas, USA - hydraulic fracturing test 4_PW_90 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 31279278 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 5 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1 |
| All Organisms → cellular organisms → Archaea | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Deep Subsurface → Fracking Water → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → planetary subsurface zone → fracking liquid |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Texas | |||||||
| Coordinates | Lat. (o) | 30.238 | Long. (o) | -102.628 | Alt. (m) | N/A | Depth (m) | 2000 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F043707 | Metagenome | 155 | N |
| F047403 | Metagenome | 149 | N |
| F056203 | Metagenome | 137 | N |
| F083468 | Metagenome | 112 | N |
| F092975 | Metagenome | 106 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0182240_100332 | Not Available | 16572 | Open in IMG/M |
| Ga0182240_100362 | Not Available | 15589 | Open in IMG/M |
| Ga0182240_100613 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 9791 | Open in IMG/M |
| Ga0182240_100884 | All Organisms → cellular organisms → Archaea | 6705 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0182240_100332 | Ga0182240_10033220 | F083468 | MICDKSCEIYPCFVAVPGKECKLAEYPESVQEIVRSFYRGKESFEHELRNMAARIYVKALMDGEIDVMVKVLKELAFVYKILYSNAPDEDERAWERILEVLNDDEGKGDSD |
| Ga0182240_100362 | Ga0182240_1003626 | F092975 | VMVYDLPITVLMGKELTILTLYDGENEIHEVVDTTLDEEQLQKVVDKIIDEFEKRGYDWGYNELFEEMEKRGYIRVYASRKVVVNV |
| Ga0182240_100613 | Ga0182240_1006136 | F056203 | MAVTITDGTTTITIDTVQSIRYALRTEAIEVPIPGLKDPMIMSIGGVSRHITIEWVETENISSELKKLADQVMSGEIFKFWNVNIEEWGVQKTGVIMSIEMSQRAGEPSVLVCRVDIVLGEPL |
| Ga0182240_100613 | Ga0182240_1006139 | F047403 | MMFEDIDIKTKTDFRIGARHRVRDLNGNVIAEIETLIGTDKKEMIVILHDKDIEVRVKNG |
| Ga0182240_100884 | Ga0182240_1008846 | F043707 | MQSGEIIYVFEITEDMLLRIIKVSPEFEGDMYREGGIILEVLNVVTEDSDRVYEQVVEIPLTMEKASAISNILNYLAMECVNDLRQHANVLSMSIEAINKASESVDDEKRMYG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |