NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300020138

3300020138: Enriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 1B0



Overview

Basic Information
IMG/M Taxon OID3300020138 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0121620 | Gp0224294 | Ga0206101
Sample NameEnriched microbial communities from leaf-cutter ant dump, University of Wisconsin, Madison, United States - 1B0
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size127339579
Sequencing Scaffolds2
Novel Protein Genes2
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWF1_45_51
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCharacterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities
TypeHost-Associated
TaxonomyHost-Associated → Arthropoda → Ant Dump → Unclassified → Unclassified → Ant Dump → Characterization Of Biomass-Degrading Enzymes From Insect-Associated, Soil, And Chicken Feces Microbial Communities

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: Wisconsin
CoordinatesLat. (o)43.0758Long. (o)-89.4125Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045186Metagenome / Metatranscriptome153Y
F099558Metagenome / Metatranscriptome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0206101_1006618All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium GW2011_GWF1_45_52187Open in IMG/M
Ga0206101_1028470All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales887Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0206101_1006618Ga0206101_10066182F045186MAYEKGSMSGGKPFMDNGKGMCSYKDNPLKPARRVEPMCGPGGNADQIKANKLLKQAHMKADSLRGKSGM
Ga0206101_1028470Ga0206101_10284701F099558MTLSNTAYSLVPSIARRDRSTASRLLSAILSQWPERTRGSPPLPNYLRRDIGLEPLEPSRKYWDVR

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.