NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300020224

3300020224: Extremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - OCT_B_ViralDNA



Overview

Basic Information
IMG/M Taxon OID3300020224 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0116196 | Gp0213325 | Ga0187841
Sample NameExtremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - OCT_B_ViralDNA
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size43262503
Sequencing Scaffolds7
Novel Protein Genes7
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus5
Not Available2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameExtremophilic Microbial Mat Communities From Usa And Mexico
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Microbial Mat → Extremophilic Microbial Mat Communities From Usa And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Surface (non-saline)

Location Information
LocationUSA: Wyoming
CoordinatesLat. (o)44.534Long. (o)-110.7978Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043237Metagenome / Metatranscriptome156Y
F092976Metagenome106Y
F096328Metagenome104Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0187841_100256All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus5382Open in IMG/M
Ga0187841_100769All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus2713Open in IMG/M
Ga0187841_102544All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus1448Open in IMG/M
Ga0187841_103186All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus1307Open in IMG/M
Ga0187841_107894Not Available861Open in IMG/M
Ga0187841_108892All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus814Open in IMG/M
Ga0187841_123750Not Available503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0187841_100256Ga0187841_1002564F096328MTEAAYFISKEAEVILAPFVQVLVGAESPPTISSPLLAATWDYSFNDDLLVDLKLACKANIYGRVSHQTLADIRKSLENGVMVALLVPPYLYLLSPWDIGWDGSLESLRTRPFVLVPKGVLEQVWDVYFKMTS
Ga0187841_100769Ga0187841_1007693F096328MKDSAYFWSKEAEIILAPYVQILIGAESPPTISSPLLAATWDYSFNDDLMVDLKLACKAHLYGRIADKTLADIKKSLRDGVLVAVLVPPRLYLLHPWDITWDGTLEALWNRPSVLLPKNVLEQVWELYERMTN
Ga0187841_102544Ga0187841_1025442F096328MTEAAYFWSKEAEIILAPYVQILIGAEKPPTISSPLLAATWDYSFNDDLLVDLKLACKANIYGRVSHQTLADIRKSLENGVLVALLVPPRLYLLFPYDLTWDGRLEALWNRPSVLVPKNVLEQVWSIYERMTN
Ga0187841_103186Ga0187841_1031864F096328MTEAAYFFSKEAEVILAPYVQVLVGAEKPPQISSPLLAESWDYDFDGLLIDLKLAMKANIYGKISEQTLADIKKALRGGVLVAVLVPPRLYLLHPWDITWDGSLEALRNRP
Ga0187841_107894Ga0187841_1078941F043237MDLERTSRYIAQLSRHGYKYAILGELSNYNRELVKRIDLEGFVFYLCRLPSKREVIAYCLKKTDKPFRVYCLASKPLEIPHMPLKLHYDEKTRRLRLLAQKSFISDCLNAIERASSLTYPSPKLYIAAVNKALRQLYSVLAYTYNDRERVRAIRKKVKHWVVETLKKQYGLKPKDAMTDYHRYVLKFSDVLRKKRQKAHKR
Ga0187841_108892Ga0187841_1088922F096328MTEAAYFFSKEAEVILAPYVQVLVGSEKPPQISSPLFAESWDYDFDGLLIDLKLAMKAGIYGKISEQTLADIKKALRGGVLVAVLVPPRLYLLHPWDITWDGTLEALWNRPSVLLPKNVLEQVWELYERMTN
Ga0187841_123750Ga0187841_1237501F092976MAAQEILFWKQELRRLSQEFLRRWKKCPRCGSRWADIAWDAESDHEILLVECRSGHLFRADDQFWLFACDDNSDAGVY
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.