Sample 3300020484

3300020484: Freshwater microbial communities from Lake Mendota, WI - 8OCT2008 deep hole epilimnion (SPAdes)

Overview

Basic Information
IMG/M Taxon OID	3300020484 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0054983 \| Ga0208049
Sample Name	Freshwater microbial communities from Lake Mendota, WI - 8OCT2008 deep hole epilimnion (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	33830126
Sequencing Scaffolds	49
Novel Protein Genes	57
Associated Families	54

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	1
Not Available	32
All Organisms → cellular organisms → Eukaryota	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	3
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → epilimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001507	Metagenome / Metatranscriptome	681	Y
F001881	Metagenome / Metatranscriptome	622	Y
F001968	Metagenome / Metatranscriptome	610	Y
F005092	Metagenome / Metatranscriptome	412	Y
F005173	Metagenome / Metatranscriptome	409	Y
F005230	Metagenome / Metatranscriptome	407	Y
F007682	Metagenome / Metatranscriptome	346	N
F009654	Metagenome	315	Y
F009806	Metagenome / Metatranscriptome	312	Y
F011822	Metagenome / Metatranscriptome	286	Y
F014138	Metagenome / Metatranscriptome	265	Y
F014250	Metagenome / Metatranscriptome	264	Y
F014585	Metagenome / Metatranscriptome	261	N
F014701	Metagenome / Metatranscriptome	260	N
F014708	Metagenome / Metatranscriptome	260	Y
F015178	Metagenome / Metatranscriptome	256	N
F015855	Metagenome / Metatranscriptome	251	Y
F015988	Metagenome / Metatranscriptome	250	Y
F016924	Metagenome / Metatranscriptome	243	Y
F018650	Metagenome / Metatranscriptome	234	N
F019277	Metagenome / Metatranscriptome	230	N
F021515	Metagenome / Metatranscriptome	218	Y
F021760	Metagenome / Metatranscriptome	217	Y
F022161	Metagenome / Metatranscriptome	215	Y
F027111	Metagenome / Metatranscriptome	195	N
F029991	Metagenome / Metatranscriptome	186	N
F036546	Metagenome / Metatranscriptome	169	N
F037071	Metagenome / Metatranscriptome	168	N
F037568	Metagenome / Metatranscriptome	167	N
F049631	Metagenome / Metatranscriptome	146	Y
F057098	Metagenome / Metatranscriptome	136	N
F057130	Metagenome / Metatranscriptome	136	N
F057361	Metagenome	136	Y
F058683	Metagenome / Metatranscriptome	134	N
F061529	Metagenome / Metatranscriptome	131	N
F062693	Metagenome	130	Y
F066479	Metagenome / Metatranscriptome	126	N
F071231	Metagenome / Metatranscriptome	122	N
F076911	Metagenome / Metatranscriptome	117	N
F078209	Metagenome / Metatranscriptome	116	N
F079597	Metagenome / Metatranscriptome	115	N
F079784	Metagenome	115	N
F080674	Metagenome / Metatranscriptome	115	Y
F080928	Metagenome / Metatranscriptome	114	N
F091582	Metagenome / Metatranscriptome	107	Y
F092040	Metagenome	107	N
F096716	Metagenome / Metatranscriptome	104	N
F097196	Metagenome / Metatranscriptome	104	N
F098728	Metagenome / Metatranscriptome	103	N
F101308	Metagenome	102	Y
F102514	Metagenome / Metatranscriptome	101	N
F102593	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208049_100003	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Temoridae → Eurytemora → Eurytemora affinis	15308	Open in IMG/M
Ga0208049_100259	Not Available	4271	Open in IMG/M
Ga0208049_101044	All Organisms → cellular organisms → Eukaryota	2482	Open in IMG/M
Ga0208049_101054	All Organisms → cellular organisms → Eukaryota	2472	Open in IMG/M
Ga0208049_101112	Not Available	2402	Open in IMG/M
Ga0208049_101142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2368	Open in IMG/M
Ga0208049_101252	Not Available	2287	Open in IMG/M
Ga0208049_101431	All Organisms → cellular organisms → Eukaryota	2133	Open in IMG/M
Ga0208049_101511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2071	Open in IMG/M
Ga0208049_102105	Not Available	1767	Open in IMG/M
Ga0208049_103452	Not Available	1341	Open in IMG/M
Ga0208049_103997	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1231	Open in IMG/M
Ga0208049_105608	Not Available	1005	Open in IMG/M
Ga0208049_106388	Not Available	930	Open in IMG/M
Ga0208049_106401	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	929	Open in IMG/M
Ga0208049_107289	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	855	Open in IMG/M
Ga0208049_107891	Not Available	815	Open in IMG/M
Ga0208049_108184	Not Available	797	Open in IMG/M
Ga0208049_108229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	794	Open in IMG/M
Ga0208049_108240	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	793	Open in IMG/M
Ga0208049_108516	Not Available	778	Open in IMG/M
Ga0208049_109513	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	724	Open in IMG/M
Ga0208049_109563	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	721	Open in IMG/M
Ga0208049_110025	Not Available	701	Open in IMG/M
Ga0208049_110413	Not Available	684	Open in IMG/M
Ga0208049_110549	Not Available	677	Open in IMG/M
Ga0208049_110704	Not Available	672	Open in IMG/M
Ga0208049_110774	Not Available	669	Open in IMG/M
Ga0208049_111263	Not Available	650	Open in IMG/M
Ga0208049_111482	Not Available	643	Open in IMG/M
Ga0208049_111530	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	641	Open in IMG/M
Ga0208049_111790	All Organisms → cellular organisms → Eukaryota → Opisthokonta	633	Open in IMG/M
Ga0208049_112673	Not Available	606	Open in IMG/M
Ga0208049_112679	Not Available	606	Open in IMG/M
Ga0208049_112891	Not Available	600	Open in IMG/M
Ga0208049_113154	Not Available	592	Open in IMG/M
Ga0208049_113160	Not Available	592	Open in IMG/M
Ga0208049_113714	Not Available	577	Open in IMG/M
Ga0208049_114419	Not Available	559	Open in IMG/M
Ga0208049_114732	Not Available	552	Open in IMG/M
Ga0208049_114855	Not Available	549	Open in IMG/M
Ga0208049_114895	Not Available	548	Open in IMG/M
Ga0208049_115293	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	538	Open in IMG/M
Ga0208049_115375	Not Available	536	Open in IMG/M
Ga0208049_115537	Not Available	533	Open in IMG/M
Ga0208049_116263	Not Available	517	Open in IMG/M
Ga0208049_116319	Not Available	516	Open in IMG/M
Ga0208049_116683	Not Available	510	Open in IMG/M
Ga0208049_116897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	505	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208049_100003	Ga0208049_1000035	F029991	MHEKTLFPGDETSHSFANNKYRRHMLSFPMYPFRTLCPRDAYNMNILKGGNSEFDQTSPLLPANTQLNIKFTRRPAAHLLSYMLPTNLNLNLGASHNALTQTERNNALNFTVTTPVDTQYTITGIAINIQNMYLQVSKIFYIKNIKIFEIKNI
Ga0208049_100003	Ga0208049_1000036	F066479	MTCLLGNTDARTVYRNFDLANLNVNLADRTHMLYNRYLCYNRFLPPDEKRYFAHLATNTLAVAPGSATDEKGAFNIFPMSLTTEEMNKSTSSALGK
Ga0208049_100259	Ga0208049_1002591	F098728	MYVIVAPGWSELSFRSELVAGDAWRFCLLLINLVIDDVVIKAVVHVHVSKANMALNVALSIAKICTGQHDTMQNIMNPNAKIATAQVTIFNAVLDSVIFSNLMSVGSNIVISLIFAAF
Ga0208049_100259	Ga0208049_1002594	F007682	LTIYCRWFRRSQHLEEDQEPLLERMRLEHKRDDLESRIGYLEADVAYLRSDYLFLNDGDKKDAMFATICGLDREIEQLKSELASVNSQLSYY
Ga0208049_100259	Ga0208049_1002596	F005173	VTRMRLDESADGHFSYGPSLGLFREPFINERYLFGDSQYHNCKPYLDMEKEFFSDNAAIVREVYFDTDILLGVDSDEDLGVEEAVNAEDLVPVLSAEEIQWQHAAANDILNMEIVRVTPVNSDSEDEETMERVASPVVVEAVSDVTDTNEATGSADNVVNNSPNLVIAEEGDYVEEAVEGRADVPSGPGPFSEDVTMDDFLPRPTRGSVVFLAFSDW
Ga0208049_101044	Ga0208049_1010441	F018650	DWWTFKPSSPLKAYLSDHEIVMDEYFSLEELRCQVMSIIRHRAQLSNHNVIVLEDQELQMVFDSWYIFVPDVENHLLAHVIPAPADISNDLQNKHMTEEFYINSPVDLLYKDPSSVFWILPFVDFAMNQSTGNVRSWKKLLFMFTKFCLNNTTYFTRVSDSIIRINENTCLTSLFGFKYFHRSQIEHLLKKITKFLGRKNSMVQSCHFIKHNPVFNKTTKHQNVFAFIDDIINKNNDMMPDFQTGLYI
Ga0208049_101054	Ga0208049_1010541	F018650	EIVMDEYFSLEELRYQVMSILRHAAQFPNNSDVIVLEDQELQMVFDSWYIFVPDVVENHLLSHVIPAPADISNDLQNKHMTEDFYVDSPVDLIYKDPSSVFWIPSFVDFAMNQSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDCIIGINENTCLTSLFDFKYFHISQIETLLQKITKFLGRKNSIFQSCHFITHNPAFDITSIHPNVFTFIDDIINNNNDMMPDFQTGLYI
Ga0208049_101112	Ga0208049_1011122	F061529	GGMSCTPGRNSEWMESQGLAAQERKSDIGAMGERRRALESNEFAHGGRGSLERYGGLPRVVILTPEGGQLINMGIGRGYVFTVISQEAAARYAMHRSKLPEPLMIAGPAGQQVRAVGRCEIAFPQEKAVGGKMIILAFEVEKLEELHETPYGGLERWHLQLGEEDEGYLRWLRVAQTGDRPYCELTLERVTLDPARVSRSTWKFLVCKGWQMTETVWLTAVRAWNMPVSRLSADAATRLGLTEKPNDWCQVRPCNAAGRQLDGFLAKIASVLEIAPPGYPTEERPREMSFRRPDVVIGTKDWESVEGFLRNVEPDKMAELKEKRKYHMRVVLRNEERWYLNVLVSETARQSRILSTAAIMLGRESVHDKRIHFRDMNGTEVSIAVDVVSTMEELLVNENPCHGLPKPHMVLCPEDERCIRKTMLTGWKSEADLSRGWASQGKRKSQPTSGAGEKEPGEKVFLKHLKVNTKPCFMRVSALFNENAPDTLIGYGAATILGLKGGRTRRQVTTEGGSRGRSYAWYDVPLQDEDGRVRQIRAYGVLRTARVKNEGENGKVLGDSPGGATGPAQLWECIDLIVGRDNQDRRPENTLGWPGRRPKGGYAVKGTGDPGDYIKVKIENPDPRN
Ga0208049_101142	Ga0208049_1011422	F097196	MSKPPISFRLSDDEWLLLESNQQEGESISLTAARLLRKQLGVLDGPIDKLETKTLSQLIDDRIESYREDVNSYVNNRVNELLLRIEALETKPVKTTTRRTTSKATPKESQP
Ga0208049_101252	Ga0208049_1012521	F037071	MALSPEDVRYLRHWEVSIRCLLRDPDLDFVRCLRIISERIVPQLVPAVNLEEHRRQTKFSACDEFASEIWAGYLGSMITRNDKELADIFKRVSEEVMLEQGYPNTMKLGLWVHPYKLIANVCRALATSDMGRSFLKKFVFTREYRGLEESERATNAPPGSNQRPREARLADVIASMAKSHSGRAHLRDCVLKGKEELFGWRVGEHEMSVTLSEHGGVPKYDGTDDIFIRIHLDSVPESIITGRHPTDHQVPDRPLRRGPAARETGPGWVSTPYVSRP
Ga0208049_101431	Ga0208049_1014311	F018650	WWTFKPSSPLKAYLSDREIVMDEYFSLEELRYRVMSILEHAAQFLNSDVIVLADQELQMVFDSWYIFVPDIIENHLLSHVIPAPVDISNDLQNKHMIEDFFVYSPVDIIYKDPSSVFWIHPFVDFAMNRSTGNVGSWNKLLFMFTEFCLNNTTYFTRFSDSIIGINVNTSLTSLFDFKFFHLSQVETLLQQITKFLGRKNSMIQSCHFITHNPTFDYITSIHPNVFTFIDYIINNHNDMMPDFKTGIFNI
Ga0208049_101511	Ga0208049_1015112	F097196	MSRPPISFRLSEEEWKVLEYNQQDGESLSQTAARLLRSKLGLIDGSIDKLETKTLDRIIEDKVNELRSDVNSYVNNRVNDLIARIEALETKPKTTRRTTSKTSPKETET
Ga0208049_102105	Ga0208049_1021052	F014708	MPENAGVANFRILLDELAAVVFQTPAYLPVLYPVGPLEKVLYIGGVGPEAVREGLRLDVPDGIAPKFYSQFLNDSLFHENLSGSIAGCHPVNL
Ga0208049_102105	Ga0208049_1021053	F019277	AHSDNAEIDEKLDGDTLNHFEKIILQRKKRLKYSRKMEAPQFAEKAIVYMRDMIPSTSNILKIPQRGPFQITEIKERNVVLLDPETGQTVNTHLELIRPLNLKEFRLFLNKKWDLNTHHQKAIDKRLQPGIFDEPLHPMPLEQAMEAEKPVEIIDEIDLEELFYPPPTNDGSLIAPETLIDSIPPSDLDVETQPAENPPQAPATHEIVDEFDDAQINNNKTNELAFVNSLHAHRDLSKTFRDTLRSRKEKLITFFLSKHDQYVKIPGVGEHTESDID
Ga0208049_103452	Ga0208049_1034521	F057130	MANPLLKLADFKAEYKLNKALQRITNCMAGTLQANGQPMFPNEPGTLLNDIIRDYNLQPAEAPPPYDFGLDNHVTIEAIKAECTRRNVSFFDVTNSHGNRQFYDITYGAEPQPGQEPDLNPWREYSRPETADKNLELAQVVCHGDSTTIVDWTTTMEELRKLFLARVYTNDMAKCCLMHLVQKYHPEQRILLRTMTANQIATYLLQLDSNRDKRTLHRQQLFRIMRSPEEDLSAALARVQLSIDAIYPANDPAYAVHRSNTLRAAILSFCSDPVAQAVMELIRSRQS
Ga0208049_103997	Ga0208049_1039971	F037568	MAFNFDKFESEFKQKRLFQSVAQLFGALRDPADQNARLLGVEPGDPLTQFMEQLRIGTDEPIAEFDFELGDPVTIEAAGRLCRDRRVNGAPAPVNLPAMLVTAGQRLFFNTALQQPETYVEIARPEASDLPSEIAVCHFLDGAKTVI
Ga0208049_105608	Ga0208049_1056082	F005230	AQQGVTLPDGEHRETRPSKRTRTGLSAFHYDKEAFELFKDKKRMEIHEFRMNYQGPPYNPVERFLWGEICRDYDCPMGNEAFNHEIGKECEKNPMEAWISGPADIILTADAAKAYREAEAALAEAKEKNPNWSMDKGWICDNQS
Ga0208049_106388	Ga0208049_1063882	F101308	PKKAIKIIVSGIENIGSIPNNIQNQNVENIEIIKXSPXAKFTISINPKIKLNPAAINA
Ga0208049_106401	Ga0208049_1064012	F091582	MKSGHKVSIGACDPGAVNAAWAYRMFQLCQNRADKLGPFVRIKGSGLLSKMRNRVVKAFLENTDSDWLLMIDTDEQLDTETFDLLCQTAHDKERPVVSALVFAAFDAHKHLYPKPVPAIFQDVPEGFLPLFKYDRNAVFEIDACG
Ga0208049_107145	Ga0208049_1071451	F016924	AGLKKRAKTIEHRLPLVTAQLSLLWSGVTGSSRPVPSEIRLTSTGAEMTDEEHVATAETHLRYAEGHLQPTEEHMADAEVHLMLVKAHLAALAVAEPPEVELQEAESSPSIGLAGGKTDTARRIAEPGKERSPTPRPGAERGNGSSGGSPRPEAGERLACPMRECQGSATHPLDECEKFRSLPVAQRGRRVKNWSRCECCLTDCRDRRTGIRCYRRTGFRRHPLLRIVPQAEVNPAGDKKRRQQQPRKAAARGGQASPRGKPGRGDDGHDQGRVTPPQRQTDRWNFPV
Ga0208049_107289	Ga0208049_1072892	F071231	MTRKDYVKTAEILSNYFATSVFDEQGEMLFADLVDEFSLMFESDNERFDANKFALACYKKIEVDA
Ga0208049_107871	Ga0208049_1078711	F058683	DPISSILFLLATEPLNRALAQNYGQLMYKTRGNTTVGPILFADDNLNPLAIRSANDIQPIIDLYNQYTMVSGLNINIRKTTALCINTPPEVIQGLNQKGIETPENCKHLGIYLGKTIERTIEETMRNTEAKRIKRRILATTPPTDLLHRALLINTALIPIYNHIFMALPTQEDFMKDLQKEITDFLWTRQQEGAKIQKRRLIAKDRISASFEKGGLQVPHPADTADGLHLNLLQKIYNKIRLPDRYPNSLLPNILHEILQDAGCPSLQYHL
Ga0208049_107891	Ga0208049_1078911	F027111	LILILILIFILGETRDRGSVWSLDQHQQQQQQPRICMDIASYYGIVSYAVGVSLILSIAGIKTGRRFFHLFNRRRRHAARHADQQIVENGDDERVNHRRRPPPRDQEELDLIGMESVNRDRVFTDNPEVSGQESGRGSTSRF
Ga0208049_108184	Ga0208049_1081841	F102593	GTRGGEGPALSDPGQRAPEVGSKKWFAALLEKEGIKGSQRSRIMAGILMGLESTNQPAPELDSSVPAVAVGVLRAERPKDESQWRCRVPTCFQSCHALVDCPLFLRMPAEERGEIVALSDLCVGCLTPGHGTKAQACPFKDEPHGACAKPKCKGAHHQLLHVDGKQSRCPHQYLRGDAASKQRCAQIAAARAQADHQPPVQLMTQRIKAAAGKTCLALWDIGSQVTLATHKAAKEMGLEPILGEPLNLMGVGGSQKTKSTVRYKI
Ga0208049_108229	Ga0208049_1082291	F014701	RTPSPHEDPTPTEDSGHEVQLVAQWVSTKGGVPALIFWDTGSQVTLVTQKMANTLGLTAIPSSPLRLEGIGEGYRPRAATRFKVPLVDTGGRTIVVTAYGVDVIMSPLAGGDITLMREAFPEVPAGGLVPTAGEVSLLMGQDNLSLFPAERRRVGNAALYMSRFGTGWIASGRPPRASSGGSSRIVGVCVARVMEHESASRPRPQEEDAAICAVLTVAPKRTAPPQHVEGGIFQPYDFLTAESLGTDLPRRCTSCQKCKECKFR
Ga0208049_108240	Ga0208049_1082403	F022161	MSEHGHCPNCNADLDGGSIWEHFFQETGSEEEADRIAKMYGATREKGKFGRQIGLYDRDKDRTVGWKCPDCEHVWERT
Ga0208049_108516	Ga0208049_1085162	F009654	MTEKDREKMDGQLRKFRVSLPEDECVMKLQEYCKFSSTLLKIPVIKKPLCIDANCHNNVNHYVNTYGGEKISGYYLITDTEDETYGCAIYHSIWKNTYGDLVDITPFEDGREYNMFSVMNTTEYYSGV
Ga0208049_109513	Ga0208049_1095131	F102514	RQCKEQSKDDHWLCWSFSDLVEGGVIRRMLPEVKSQPGRLVYRCRTTIYVKSGADLGSKNYSVQLTTLYDTNQRQSYIANEVAAAHALRYVRVPTQVVYTSSTTSEKTNRLYLLDVKPRTKKAAAKGPLLLTAYGLDKVDLVLPEEPKLEMLRKRFADRPGRLSNTSLAQPEAPAQLIVGRDNPLYIPEVVMKSVKGGSDLYFMRSNFCLGELVFGETEESIMEQKKAASGPRTTSTPKP
Ga0208049_109563	Ga0208049_1095632	F005092	MDKLDYALSAIRSCFICEGRGHLYWGNGEDYDTETCECNTYDIILDDDGDVIWDNGLLSEPELAIFGSKEAN
Ga0208049_110025	Ga0208049_1100251	F014138	MKNRFRVEIYDANKLNDLTIYSEQGVDKEYLTELAFSNRRNFFGDVRAYVYDTLKKTKTTALY
Ga0208049_110413	Ga0208049_1104131	F057361	MACVSYCDTSLLEHDLVLCNEYKLGGVSAIIVGACGTELVDPSDAVEVDALLASGEARMISDIRFALPAGSPITVDSPIGCGTSIRINEDRTATLYDANVTDGN
Ga0208049_110549	Ga0208049_1105491	F096716	MKTKNLFFLLITPLSVIFTLLISSALWSAPAPLIPDSGPIVYLLKPILVSLVYVLGLLVVALLISGGIFVPFQENNSRFAAKFSLALSGISFAAAVFTLTLALSQPLSVVAQIEVIATYGWDVSSVRALLLISLIALVSFLVLQRPNLDRVGLVATFNVIGLSLPALLSHGGGISTHQWAVVSGLMHGITVSL
Ga0208049_110704	Ga0208049_1107041	F001968	MFDELWSEIQDAPGEIFDLDIPELKDEKFDVNEYLNSNYDY
Ga0208049_110774	Ga0208049_1107742	F079784	MTTRKKVSKPRQVLDIIIKHWRPTIGSLVILSSVFALIFKQITTETLAAIVAAMVAAGYIPKSNDNG
Ga0208049_111263	Ga0208049_1112631	F009806	NAVDANSPNQSPNDEKAIARQSLRNAGIDRTLLDSDCAGADG
Ga0208049_111482	Ga0208049_1114823	F001507	MTQTYKPYTINELVCEIYEDNLSHFEFEENMGGEPCDCNLHITMET
Ga0208049_111530	Ga0208049_1115301	F021515	MVDFENKLSKIETEVAAMREKVSFFSVIYEKFDRTLDKLDERTIEDKRELQAMMDDLRTDLVQEMKSLREEMAAQHAVEKQKIEDLNKWRWLVMGGAVVVGWIISKLGLPFEVK
Ga0208049_111790	Ga0208049_1117901	F078209	HCKGYAKALLEGLNKRFKNLENDEQCLLASAFHPKFRQLGWLSEEKRRGLKKKMQDLVAAKLKKKVEEADLTLPVDNDSADAGTSAETEVTGVVRNCTDDLFAHMDDILDEPTHRGRRNLIDVNAEEIVNTWMATKRSDELKDEDFQLSRILTDLFIQFNTPVPSSAGVERLFSQAGDILRPKRISLSEDRFHQLMFMRGNRHHWKTYKE
Ga0208049_112673	Ga0208049_1126731	F011822	SATEAYQVQLRLSNDPRFILRAEGVETLECVRSRNERGSAKALQPDVIIGWPDWSKVQPFAASGWAVSGQTPPGAAAPATKWHLKMNQKGGPPMYLNVELDPMRQRSAVTHEAAARIGRQYEAFHMLFARAEDGEVRSLVAVGADAIVRADRRRPADRVREGPDLLLNAEDAKDVAKCLKPGWKSKEEVGGLGGCPMKGQW
Ga0208049_112679	Ga0208049_1126791	F015855	VMAKFIPKVVPEPNWEKRTEPCKQYDLIHAFQWYNHNKESRDARKYLIEYLVKNNEITPLQKQAADYLNLSWNIVDGWLARCLGRGAWIPDTTFNNFKERMNVFRERLDKIIVEKGLAATVVADTSNVISIQERVQGKVDYFIMELEAKFDDVWHEQSGEEFVPYTWMVENEVKPMHASKIAEYFKQRAADWIAIIESKDEY
Ga0208049_112891	Ga0208049_1128911	F015178	LSLSLDEDLSLGLGLSLESDLLCLSGLVRLSLSWFSRLSDVSLEWLLSCELFLEFTGVLSALSSFSNAVIWYKLVRSPRSLSDFLVDFSGCCHFLPCFFFSAVASSISNCFVGDLALKEGDGGRRCLGPLFSFERDLLEDDGCVSAGGGVVFSLSAEDSLDLSGELWWGEDCRE
Ga0208049_113154	Ga0208049_1131541	F076911	MKVVSDVLLLLCLHKFDLWVTAEAGQALACLYSGARLYKGPSQANLSQSAATRSTGNI
Ga0208049_113160	Ga0208049_1131601	F000447	MGYIEIFRIDQNGAGWVDLSEATPDELFNIEVGLLNEGAL
Ga0208049_113714	Ga0208049_1137142	F080674	VILVADIAHMLQGVQELSSTCFVESEFVLATFFALVLA
Ga0208049_114419	Ga0208049_1144191	F036546	PAATIKYVPHSTARRRLFQDEEDSEDELNIYSTQDNTSPPPYHQNSKTKMYPNVPSAPTGRSPEALQIGKPGLHNTEMQENSWEIIRANKLGAKLTKQNNTPALFFHEKTNKVYTLEGKEVPVESPPRNLIIEYQDTLLTLPQLSLDQIRHHLTNDTIEYDKDLKAYYTPVKNSGRRFYHFAYRSL
Ga0208049_114732	Ga0208049_1147321	F062693	VQKKNTNIILDIGENELNLFQKQYLNLIELHDEIEKLFEEGDKIDKRKKKMYNEWKEKVNFLIDMYNTRSKFKTYNKIK
Ga0208049_114855	Ga0208049_1148551	F049631	MSYIDKVIERRDAVKAEMDAVLDAVAAENRTDLTAEETEKVDALVAESRSLDEKIEKAKVQAVADAKVSEARKAVAEVATPVS
Ga0208049_114895	Ga0208049_1148951	F092040	MEVEMNKYVIKYEDGKSVSVTAKNLEEALDRFKELRIETATKEIRVMSAWERYNKHKERE
Ga0208049_115293	Ga0208049_1152931	F014250	MITTELAPHLQKLVDLGESGTDILHGELKNLMYEAEKEYNAAVEQEEYTEEAMDSMERKYWEGQMDALSWVYALTYQLSFA
Ga0208049_115293	Ga0208049_1152932	F015988	MNTLIEYLKIHAISLEQDLEDISNQMESLDPASKDYTELDFEYNHVSGQSLATRHILSVAEGMIE
Ga0208049_115375	Ga0208049_1153751	F014585	MNQLGQKMRLDELARLLMTSTMPVNDREMIITEIKKLTRRKNESLRVPMSNLYSLATTYYNNDPDMESQRNKLLFNGLQHFTTGITKEKLTSIIKYSQLQKFKLDYHDTLETCILSEKTNGEPADDLQFGQSKDTILVFQANITPVDSLLDNEITPIEFTLGNQNKKGRKYEDTAKPK
Ga0208049_115537	Ga0208049_1155372	F021760	MCGPVFDYTFEDFLNDASQEEWDAWEQKAAELELPLDYYLQEFVACDS
Ga0208049_116263	Ga0208049_1162631	F079597	TALKVVTSEKIGGSGVMSTLGTWYGGVVMGVLLPFNEAAILYRHFNCAPLQKQKIIVFAANNSRCCE
Ga0208049_116319	Ga0208049_1163191	F000671	MSEKIFCYSCNKTKNKLNLKKSSLLTINLFLCQTCIDNKFEPRWVVLIAGRQNGHETVKDFIQKKRYIGVEITASELLV
Ga0208049_116683	Ga0208049_1166831	F057098	FQLYYDTPKPWSKPSHKKLIDFSMALNLIQMSHKRIDDKPGNEFVASQKVDDNFIRLLSEILRFILAWTVPLTLREIALYKYFKLDPVGYEHDKNLKIGLFDSPPLVDSIENRVSSRMEELMKQGEEVLVSTPKPEDPNRAQTLVEERK
Ga0208049_116758	Ga0208049_1167581	F080928	QIKTSVETVQYDLKLNLSEASWDVLAEEFLLLFKRFENLTFLESDLEFRNEVTSQIGPGFLDQKGFYSNMNDIIKYLTQDPDVEMAPCRRTISELDPADIKRGLANLQFKFEKIDGNWPVGELKQDLTKLNTLFSFISTYNGVFNELEEDSYRVLQGIEALSDGLFPEF
Ga0208049_116897	Ga0208049_1168972	F001881	MTDRAQAFMNAIWEARNSGADTEEKLVAAILSLATQSVKAYNAQMGLTVLDVNDMLQLAEELTQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300020484: Freshwater microbial communities from Lake Mendota, WI - 8OCT2008 deep hole epilimnion (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences