Basic Information | |
---|---|
IMG/M Taxon OID | 3300020680 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063444 | Gp0053529 | Ga0214215 |
Sample Name | Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2007 hypolimnion |
Sequencing Status | Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | Y |
Use Policy | Open |
Dataset Contents | |
---|---|
Total Genome Size | 41364591 |
Sequencing Scaffolds | 9 |
Novel Protein Genes | 9 |
Associated Families | 9 |
Dataset Phylogeny | |
---|---|
Taxonomy Groups | Number of Scaffolds |
Not Available | 4 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Bowmanella → Bowmanella dokdonensis | 1 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 2 |
All Organisms → Viruses → Predicted Viral | 2 |
Ecosystem Assignment (GOLD) | |
---|---|
Name | Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Alternative Ecosystem Assignments | |
---|---|
Environment Ontology (ENVO) | freshwater lake biome → hypolimnion → lake water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
Location Information | ||||||||
---|---|---|---|---|---|---|---|---|
Location | Trout Bog, Vilas County, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002539 | Metagenome | 550 | Y |
F011749 | Metagenome | 287 | Y |
F021463 | Metagenome | 218 | Y |
F040474 | Metagenome | 161 | Y |
F048971 | Metagenome | 147 | Y |
F076795 | Metagenome | 117 | Y |
F081038 | Metagenome / Metatranscriptome | 114 | Y |
F082043 | Metagenome | 113 | Y |
F085790 | Metagenome / Metatranscriptome | 111 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
Ga0214215_100552 | Not Available | 4340 | Open in IMG/M |
Ga0214215_100944 | Not Available | 3060 | Open in IMG/M |
Ga0214215_101395 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Bowmanella → Bowmanella dokdonensis | 2437 | Open in IMG/M |
Ga0214215_101943 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1981 | Open in IMG/M |
Ga0214215_103069 | All Organisms → Viruses → Predicted Viral | 1529 | Open in IMG/M |
Ga0214215_103958 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1316 | Open in IMG/M |
Ga0214215_105985 | All Organisms → Viruses → Predicted Viral | 1025 | Open in IMG/M |
Ga0214215_106974 | Not Available | 936 | Open in IMG/M |
Ga0214215_107346 | Not Available | 908 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
---|---|---|---|
Ga0214215_100552 | Ga0214215_1005521 | F081038 | MDHVKNIEKREGVDVGYKSSNIHPADGEGCVGAAGIDKSFTFDMVLDLAYKMDIRPNIIVKSGLNAKWYLKRIQKDVIEDEIQKQSWRDTSRSTMYIIEWDK |
Ga0214215_100944 | Ga0214215_1009444 | F048971 | MPICHNMSHQLNLQEKIAIFLKMRNDVLKVPLKKIINNMINKCKYINGESLERHNFGNRPIKLTNIPKDINSASFEEDLLNALGSDENEKSIVELLWGDIQLGKRVHACIIMWISVYILKRPVLYIFRNLSIDQKQLQDDITGTEKYNFNVQFIKSFFDTFNVELQECFEDLGLSIYEEYKLPELKDINSNDIINKLSNKDAMNSNDIFCCLMNNVQLAKINMKFSEYIYYNDELVNITTLVDESDLMSPTSSNDRSNDNDKKDSTASEI |
Ga0214215_101395 | Ga0214215_1013954 | F085790 | MLMPNPPLNSDPARTVFRSFSSFRFLVFAHRLGAGRAG |
Ga0214215_101943 | Ga0214215_1019432 | F082043 | MAESFSYKITTESELFTFDFSQVLSPSETISTSSCSVIVMNGVDPTPSTILIGAPVVVNKTASQRVANGISEVTYRLEMTITTSQGNTYVGVGDLPVYDASLV |
Ga0214215_103069 | Ga0214215_1030692 | F040474 | MHVFIEAILVGVFFLPIFWATEKLGLSKWVTLFLAGVFFHLLAEVTGVNKAYLMAHQ |
Ga0214215_103958 | Ga0214215_1039584 | F002539 | MRTPYIWTASGTDIALRWKNQYGWIPPSELQEYKDKWKYYQNLPLRNLDDHAKELYEQALKQAKVARIK |
Ga0214215_105985 | Ga0214215_1059852 | F021463 | MSDQLETRVVRLEIKTDNHEDDIKELRKSATDLSKAMASIEKNLAQIKYIAIGALAVVVTQSLGLDHAIKLLFGG |
Ga0214215_106974 | Ga0214215_1069741 | F011749 | VQTIYKLNKNLLDHRSTPPWWREAGESGTKQLYQPEPRPVTYIVPINRILGRLALSPVGVHGTIPAELRNRKQQLFPLGKSDEIGHPGTGSKWYYINSWVMCWPTDHAKKPLTG |
Ga0214215_107346 | Ga0214215_1073461 | F076795 | MVYAGFRQDIQDPPEAQSARASPDPHDEEYLEARPNQEEMEDAINKFLVQLEKQERNGFKDLASVLSQLPKPAQGSATSLSVADTIEAGFLPALDKDQANMFTPSELLLGYPRISRDNLHSTRISLDIPGYPWSPFRLVKSGDVHP |
⦗Top⦘ |