NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300020687

3300020687: Freshwater microbial communities from Trout Bog Lake, WI - 12MAY2008 hypolimnion



Overview

Basic Information
IMG/M Taxon OID3300020687 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0063444 | Gp0053557 | Ga0214231
Sample NameFreshwater microbial communities from Trout Bog Lake, WI - 12MAY2008 hypolimnion
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size61544036
Sequencing Scaffolds14
Novel Protein Genes16
Associated Families16

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage6
All Organisms → cellular organisms → Bacteria2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
Not Available4

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFreshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → hypolimnion → lake water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004124Metagenome / Metatranscriptome452Y
F006258Metagenome / Metatranscriptome377Y
F011059Metagenome295Y
F020298Metagenome / Metatranscriptome224Y
F026565Metagenome / Metatranscriptome197Y
F040523Metagenome161Y
F040982Metagenome / Metatranscriptome160N
F047673Metagenome / Metatranscriptome149Y
F050094Metagenome / Metatranscriptome145Y
F054521Metagenome139Y
F058703Metagenome / Metatranscriptome134Y
F071900Metagenome121N
F088000Metagenome109N
F091221Metagenome107Y
F098804Metagenome / Metatranscriptome103N
F102701Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0214231_100562All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage8581Open in IMG/M
Ga0214231_103075All Organisms → cellular organisms → Bacteria2541Open in IMG/M
Ga0214231_106018All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1494Open in IMG/M
Ga0214231_112374All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage880Open in IMG/M
Ga0214231_114630All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage782Open in IMG/M
Ga0214231_115713All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage744Open in IMG/M
Ga0214231_118523All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage667Open in IMG/M
Ga0214231_120062All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes632Open in IMG/M
Ga0214231_120719Not Available618Open in IMG/M
Ga0214231_121590Not Available600Open in IMG/M
Ga0214231_121747Not Available597Open in IMG/M
Ga0214231_121806All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage596Open in IMG/M
Ga0214231_122681Not Available580Open in IMG/M
Ga0214231_125663All Organisms → cellular organisms → Bacteria533Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0214231_100562Ga0214231_1005629F006258MGINAFCKTGNTITFTAGVVAPTPVQVSSTTLGGNQYRIINAGSTLVFLGYGNDAATANTASANVTSTGLAFPLLAGTDEILTFAPNAYFTGTSTANAVVYITPGDGL
Ga0214231_103075Ga0214231_1030757F020298MTTPNVYIPYPYPQSIEEVEADMNAIIYQPEVPQELQDQYKNFVSSPTNEADLDQAEANSDSMANE
Ga0214231_106018Ga0214231_1060183F026565MAMFSQNTITQVSGFDNPCIAGELVWEQQTYWNLDIVGSDGVTPLDLTSATIDAQIIRRTVTNLQDSRYGLSFDIGDYSPTPTPITLTITNEVAAQGKFTLVINDSTWGLMADDPELDIGAQDCVAYSGRIKISFPASGSNPANDYIIFLLFLIRSDGIVVE
Ga0214231_109496Ga0214231_1094964F071900LLPVLLLSGCSLMIGNYDANEYAYVNHIRTLAQVSSCSKPEVTQIYVAALTLKNYSQYLPSNDQEVSLVNDLYKLADQLYTFDSPSPAYCKAKMNIIEKTAERIQQVTGSKPR
Ga0214231_112374Ga0214231_1123743F050094MANIHDAIYALNPAIVTISGDIAYDKNEQVVQYDLAAAQAKLTELQAAE
Ga0214231_114630Ga0214231_1146303F011059MGNMTPEQWEARYLNEEGSNYPQEKRLEFVKDYLLDPNLAAVCRKHDVPYQTAFQWKNKSWWHNMVEEILLNYKDELLAKQRQIINKTYDEIGERLINGDETYIPNEGHVRTKVKANHLATIADVTLKANQLLQGKATSINHVTIESLADKLRTITQEAIDITPKSQTIQQIEQNPQDSE
Ga0214231_115071Ga0214231_1150711F088000AFLESQTENTTQADSSTQNSSFLQNITENTTLLDLITITAQFKESIAEALNVAETEAIVAQFAESIAENISLLDVISIGSAYFFVVTENSGVANTQLIQAGFAENIAENINLADQNSIQAAFLESIAENIGVLDNNCVFGWFKINDNQNPQWGGVSVVIEEIAVFGGSTFGGIDFAGSMKSTRNESLPVGLTPAVVWSDVNTNESSNWAVVDNTQKC
Ga0214231_115713Ga0214231_1157131F040982MTRRKKRDLVASGKWWSDSQKLEAATTYLALGNGAQTAAVLDIPIQTFNRWKYTDWFKKIVEDLKSEDSLKLNARLTKLVSKALDVTEDRLDKGNYQYDPKTSELIRVPVSMKDAAKVANDMLERKDVIESKPQQEQIEKTVDDRLAKLA
Ga0214231_118523Ga0214231_1185234F054521MSDAIKDFPMENAMMSDMVALAVIEAMVSSDLGKQLEKPMEQMTAIGFAFAKEFLKQRQEWLKPKEEPKES
Ga0214231_120062Ga0214231_1200621F058703MLKNAKLASVGDVIRGYDFKPMVGRNDCYAEGTVESISNEMGYMAYKITCTTDVFDGKKQPKGKHSRVGKIVFVPFEVSFM
Ga0214231_120719Ga0214231_1207192F091221LIMAKHLENFGKWYDGILNLFPFCLDDTWIKTIGIAWLFTVEGKWSFIPKIVPTNWQYANACVFVRFGLPFAFFMQLRASPTHLFQGGIGWKQSGRIAIHCRFQTDASSAIGYHVGLPNTDHASGFEYGRH
Ga0214231_121590Ga0214231_1215901F040523MHKEIGSCGDSAVATLQANAGTNETMGIEGYWHVECRDAQGNLKWTEEFPNLVVA
Ga0214231_121747Ga0214231_1217471F098804KRQKDPIRLAEKGYLSNNLGKNKINFLTLHLVRKYLKNICNAVNFGRQ
Ga0214231_121806Ga0214231_1218061F102701MSEEQEYDVVIDTLQKHRDILWKMTKSNMDTDMFNIMDQIRLEQITQLEKAITLWRERNESR
Ga0214231_122681Ga0214231_1226811F047673MFVSQIIDEASEILATTDQTKVFRKLTQALQVLMESGHYFHTNAEVDVCTGWDGQTITLPRGIEVPLAVNVDGSPSYFRGRLFQYHVNKGGMYSPVSWAWDDRGFVATLMDIKLPSQLIAVAEHQSDVGKTLRILGNDSNNRPLRSTAADGTPVDGLIIPIHSRSDFPFGTIQPD
Ga0214231_125663Ga0214231_1256632F004124HLTSKEKAEILREHRRSGISLLAFAGKHGLCYSSLLRWRSRPGQGAQVVVPPDTEADPRFVPVKVEGEVLSGDYVLSWAGGRSLKIPPQFETDSLRRLLGVLEALR
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