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Sample 3300021279
3300021279: Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen10, Rep 1, Penicillin and Streptomycin
Overview
Basic Information
IMG/M Taxon OID 3300021279 Open in IMG/M GOLD Reference Gs0118397 | Gp0242254 | Ga0214521 Sample Name Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Alfalfa, Gen10, Rep 1, Penicillin and Streptomycin Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 80893262 Sequencing Scaffolds 5 Novel Protein Genes 6 Associated Families 2
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter 2 All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → Methanobrevibacter thaueri 1 All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix 1 Not Available 1
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea Type Host-Associated Taxonomy Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: California Coordinates Lat. (o ) 34.4149 Long. (o ) -119.841 Alt. (m) N/A Depth (m) 0 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F046107 Metagenome / Metatranscriptome 151 Y F086383 Metagenome / Metatranscriptome 110 N
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0214521_1000257 All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter 11437 Open in IMG/M Ga0214521_1000827 All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter 3609 Open in IMG/M Ga0214521_1001112 All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → Methanobrevibacter thaueri 2977 Open in IMG/M Ga0214521_1009831 All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix 1244 Open in IMG/M Ga0214521_1055724 Not Available 518 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0214521_1000257 Ga0214521_100025713 F086383 MTLHIALDGIYVNVNQHITQKLVEYLASKSYAVKTIFPLEDEIIQSILNSYDLTFSEKALLTALDRSITWNNQNFSNYDIVIWQTSILSSYVFHTDQNVKPSFIKSINRFVPNMDIIVVVQPLEEKNQIIQKFNDFTKQFDNVYPVNFVNGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAKEEQNRLNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL Ga0214521_1000827 Ga0214521_10008271 F086383 MTLHIALDGIYVNVNHIIVQKLVEYLTEKSYTVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSITWNNQNFSNYDIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLGDKNQIIQKFNDVIKQFDNVYPVNFVNGAIDLTFKETIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAKEEQNRLNFRSYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL Ga0214521_1001112 Ga0214521_10011124 F086383 MTLHIALDGIYVNVNHLIVQKLVEYLTQKSYTVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSITWNHQNFSNYDIVIWQTSILSSYVFHTNENVKPSFIKSINKFVPNMDIIVVVQPLDEDNQIIQKFNDLIQQFDNVYPVNFVNGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSRNCKDYAKEEQNRLNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANLDHEVEARLI Ga0214521_1009831 Ga0214521_10098312 F046107 MSKKIIKPRSNIFKIDSVVSIKLSPDSSFIELLRXDLPFVEIDDDFVLSLCLTTSTLLVKFGILEYLSNNSLNELLMISITLVKNSVKPTIFGTDDSFYNA Ga0214521_1039227 Ga0214521_10392271 F086383 MTLHIALDGIYVNVNHIIVQKLVEYLTEKSYAVKTIFPLQDESIQSILVGYDLTFSEKAMIAALDRSITWNNQNFSNYNIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLEDKNQIIQKFSDFTKQFDNVYPVNFVNGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAKEEQ Ga0214521_1055724 Ga0214521_10557242 F046107 MYFGKMYYAGIFPFLINKKEIKPRSNIFKIDNVMSTKLSPDSSLIKLLKRDLPFVEIDEDPILSLCLISMTSTLLVKFDNLEYLSNNSSNELLMIGIVLVKNSVKPIIFGTGDS
