NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021288

3300021288: Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen5, Rep 3, Penicillin and Streptomycin



Overview

Basic Information
IMG/M Taxon OID3300021288 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118397 | Gp0242244 | Ga0214511
Sample NameEnriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen5, Rep 3, Penicillin and Streptomycin
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size121759160
Sequencing Scaffolds13
Novel Protein Genes14
Associated Families3

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E22
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. YE3151

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDetermining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: California
CoordinatesLat. (o)34.4149Long. (o)-119.841Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046107Metagenome / Metatranscriptome151Y
F074260Metagenome / Metatranscriptome119Y
F086383Metagenome / Metatranscriptome110N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0214511_1000147Not Available16891Open in IMG/M
Ga0214511_1000168All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter15478Open in IMG/M
Ga0214511_1010340All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix1981Open in IMG/M
Ga0214511_1013813Not Available1713Open in IMG/M
Ga0214511_1014062All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E21698Open in IMG/M
Ga0214511_1016328All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix1567Open in IMG/M
Ga0214511_1021964All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix1314Open in IMG/M
Ga0214511_1025245Not Available1203Open in IMG/M
Ga0214511_1027510All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E21136Open in IMG/M
Ga0214511_1038352All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. YE315905Open in IMG/M
Ga0214511_1047499Not Available770Open in IMG/M
Ga0214511_1068730Not Available567Open in IMG/M
Ga0214511_1072347All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix542Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0214511_1000147Ga0214511_100014723F086383VTLHIALDGIYVNVNHIIVQKLVEYLASKSYTVKTIFPLEDEIMQSILNSYDLTFSERALLAALDRSINWNHENFSNFDIVIWQTSILSSYAFHTNPEVKPSFIKTINKFVPNMDIIVVVQPLQEDNQIIQKFNDLIQQFNNVYPVNFVRGGVDLTFKEAIETIFEVLPTCNWCGRLFTKTIHFKKYCSNKCKDYAKEEQNRQNFRNYYKRYKDTMSEAQKGALGSRGANLHA
Ga0214511_1000168Ga0214511_10001689F074260MAEKKKTAKKWDFAKDGKPFDELPIIVKRNRKNLYEYIRTGELP
Ga0214511_1010340Ga0214511_10103401F046107MYFGKLYYAGIFPFLTNKKVIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSPFVEIDDDPVLSLCLINTTSTLLVKFGNLEYLSNNSSNELLMIGIALVKNSVKPHNFWNS
Ga0214511_1013813Ga0214511_10138132F046107MYFGKLYYAGIFPFLTNKKEIKPSSNIFKIDSVVSTKLSPDSSFIELLGQDSSFVEIDDDPVLSLCLISTTSTLLDKFSI
Ga0214511_1014062Ga0214511_10140621F046107MYFGKLYYAEIFPFLTNKNEIKPRSNIFKIDSAVFTKLSPDSSFIELLGQDSSFVEIDDDPVLSLCLISTTSTLLDKFDILQY
Ga0214511_1016328Ga0214511_10163281F046107MEIIEKMKLEIIHILKKLENTMYFSKLYYAGIFSFLTNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSSFVEIDDDPVLSLCLISTTSTLLVKFGILQYLSNNSSNELLMIGIALVK
Ga0214511_1021964Ga0214511_10219641F046107NKKEIKPRSNIFKIDNVVSTKLSPDSSFIELLGRDSPFVEIGEEPVLLLCLISTTSTLLVKFGILQYLSNNSLKRTT
Ga0214511_1025245Ga0214511_10252451F086383SYAVKTIFPLEDEIIQSILNSYDLTFSEKALLTALDRSITWNNQNFSNYDIVIWQTSILSSYVFHTDQNVKPSFIKSINRFVPNMDIIVVVQPLEEKNQIIQKFNDFTKQFDNVYPVNFVNGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAKEEQNRLNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL
Ga0214511_1027510Ga0214511_10275102F046107MYFGKLYYAGIFPFLSNKKEIKPGSNIFKIDSVVSTKLSLDSSFIELLGQDSPFVEKDDDPVLSLCLISMTSTLLDKFGIALVKNSVNFWNM
Ga0214511_1038074Ga0214511_10380741F086383MTLHIALDGIYVNVNHIIVQKLVEYFASKSYAVKTIFPLEDEIIQSILNSYDLTFSEKALLTALDRSITWNHQNFSNYDIVIWQTSIISSYVFHTNENVKPSFIKSINKFVPNMDIIVVVQPLDEDNQIIQKFNDLIQQFDNVYPVNFVYDGVDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAK
Ga0214511_1038352Ga0214511_10383521F086383MTLHIALDGIYVNVNHLIVQKLVEYLTQKSYTVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSITWNHQNFSNYDIVIWQTSILSSYVFHTDQNVKPSFIKSINRFVPNMDIIVVVQPLDEDNQIIQKFNDLIQQFDNVYPVNFVYGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSRNCKDYAKEEQNRQNFRNYYKRYKDTMSEAKKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL
Ga0214511_1047499Ga0214511_10474992F086383DLTFSEKAMIAALDRSITWNHQNFSNYDIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLEEKNQIIQKFNEVIKQFDNVYPVNFVYGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSRNCKDYAKEEQNRLNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL
Ga0214511_1068730Ga0214511_10687301F086383DLTFSEKAMIAALDRSITWNHQNFSNYDIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLEENNQIIQKFNDFTKQFDNVYPVNFVNGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSRNCKDYAKEEQNRLNFRSYYKRYKDTMSEAQKGALGSRGANLHAHANSDH
Ga0214511_1072347Ga0214511_10723471F046107MYFSKLYYAGIFPFLTNKKEIKPRSNIFKIDNVVSTKLSPDSSFIELLGQDSSFVKIDADPVLSLCLISTTSTLLDKFGNLQYLSNNSSNELLMIGIALYYFVFNRIE
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