NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021301

3300021301: Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen5, Rep 3, Penicillin and Streptomycin



Overview

Basic Information
IMG/M Taxon OID3300021301 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118397 | Gp0242243 | Ga0214510
Sample NameEnriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen5, Rep 3, Penicillin and Streptomycin
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size140324133
Sequencing Scaffolds8
Novel Protein Genes8
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Fusobacteriaceae → Fusobacterium1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. YE3152
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E21

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameDetermining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal distal gut

Location Information
LocationUSA: California
CoordinatesLat. (o)34.4149Long. (o)-119.841Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046107Metagenome / Metatranscriptome151Y
F086383Metagenome / Metatranscriptome110N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0214510_1000952All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Fusobacteriaceae → Fusobacterium6881Open in IMG/M
Ga0214510_1001617All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter5536Open in IMG/M
Ga0214510_1008093All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix2715Open in IMG/M
Ga0214510_1050381All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. YE315863Open in IMG/M
Ga0214510_1050513All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix861Open in IMG/M
Ga0214510_1055084All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix806Open in IMG/M
Ga0214510_1061036All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2742Open in IMG/M
Ga0214510_1074296All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. YE315629Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0214510_1000952Ga0214510_10009521F086383LTLHIALDGIYVNVNHIMIEKLAEYLTQKSYTVKTIFPMQNEMMQHILTSYDLTISEKALLSALDRSIIYNHQNFSNFDIVLWNTSIISSYAFHTTAEVKASFIKSINRFFPAMDIIIVVQPLQENNQILDKFSSLIQQFDNVYPVNFVDGGVDLAFREAIETIFEVLPTCNWCGRLFTKTIHFKKYCSNNCKDYAKEEQNRLNFRNYYNRYKDTMSEAQKGALGSRGANLHAHANADHEVEARLISNEKKRLGL
Ga0214510_1001617Ga0214510_10016171F086383MTLHIALDGIYVNVNHLIVQKLVEYLTQKSYTVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSITWNHQNFSNYDIVIWQTSILSSYVFHTNENVKPSFIKSINKFVPNMDIIVVVQPLDEDNQIIQKFNDLIQQFDNVYPVNFVYDGVDLTFKDAIETIFEVLPTCNWCGRLFTKTTHFKKYCSSNCKDYAKEEQNRLNFRSYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL
Ga0214510_1008093Ga0214510_10080931F046107KKVIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSPFVEIDDNPVLSLCLISTTSTLLVKFGNLEYLSDNSSNELLIIGIVLVKNSAKPTIFGTGDSDEPLKS
Ga0214510_1050381Ga0214510_10503811F086383NVNHIIVQKLVEYLTQKSYAVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSITWNHQNFSNYDIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLEEKNQIIQKFNEVIKQFDNVYPVNFVYGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSRNCKDYAKEEQNRQNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL
Ga0214510_1050513Ga0214510_10505131F046107MYFGKLYYAGIFPFLTNKKVIKPKSNIFKIDSMVFTKLFLDSSFIELLGRDSPFVEIDDDPVLSLCLISTTSTLLVKFGNLEYLSNNSLNEQLMIGIALVKNL
Ga0214510_1055084Ga0214510_10550841F046107KNKKARKYYVFRQVVLCGNFPFLTNKKIIKPRSNIFKIDSVVSSKLSPDSSFIELLRRDSPFVEIDDDPVLSLCLISMTSTLLVKFGILEYLSNNSSNELHMIGIALVKNSTKPTIFGTVTGEFR
Ga0214510_1061036Ga0214510_10610362F046107YVFRQVVLCGNFPFLTNEKKKKIKPKSKIFKIDSVVSTELFPDSSFIELLRRDSAFVEMDDDPALSLCLINATLTLLVKFGSLEYLSINSSNELLMIGITLVKKLRNSAKPTIFWNMVTQMNL
Ga0214510_1074296Ga0214510_10742961F086383NHENFSNFDIVIWQTSILSSYAFHTNPEVKPSFIKTINKFVPNMDIIVVVQPLGDKNQIIQKFNDVIQQFDNVYPVNFVNGAIDLTFKETIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAKEEQNRLNFRSYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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