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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300021486 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0129088 | Gp0215271 | Ga0190346 |
| Sample Name | Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-4-5_MG |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 119658292 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 8 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1 |
| Not Available | 4 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Mexico: Guaymas Basin | |||||||
| Coordinates | Lat. (o) | 27.0114 | Long. (o) | -110.5956 | Alt. (m) | N/A | Depth (m) | 2011 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000352 | Metagenome / Metatranscriptome | 1247 | Y |
| F036294 | Metagenome / Metatranscriptome | 170 | Y |
| F036471 | Metagenome / Metatranscriptome | 170 | Y |
| F048033 | Metagenome | 148 | N |
| F050821 | Metagenome | 144 | N |
| F059532 | Metagenome | 133 | N |
| F093027 | Metagenome | 106 | N |
| F102576 | Metagenome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0190346_1008460 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1901 | Open in IMG/M |
| Ga0190346_1019408 | Not Available | 1054 | Open in IMG/M |
| Ga0190346_1023613 | Not Available | 918 | Open in IMG/M |
| Ga0190346_1034693 | Not Available | 709 | Open in IMG/M |
| Ga0190346_1039906 | All Organisms → cellular organisms → Bacteria | 645 | Open in IMG/M |
| Ga0190346_1055995 | Not Available | 517 | Open in IMG/M |
| Ga0190346_1058871 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 501 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0190346_1008460 | Ga0190346_10084603 | F036294 | MDRGSSDEAIVGVKSVANEDAVTYPRVKLPASDREVGAEGWNM |
| Ga0190346_1019408 | Ga0190346_10194082 | F102576 | LMNDLLMLEKYFPGGSLEGGIALANRLDWGLSVQMSGDDYVVSSGNEPILRTESKDALQSFIYGLGLAYAILPEGLFESLEKALREL |
| Ga0190346_1020120 | Ga0190346_10201202 | F059532 | MRNILLLGDLHCGSTEGLWHPDFVTREGQKIKLSPLQEELYEKWLLLQEKLPDYEAVFLLGDITHGLGSKDFGKDVIDCDLHDQLQCAIKLLKPVTKGKKVVVITGSRYHSSIDYDIDRGLAEVLHAKFGGAISNIRLKGTDVVINIAHGIGSRPIYTGTRMNQDVFNAILTEHLLKMPEVSVIIRAHFHIFSYFAIYGKHFIYIPGWNAIRKGRFITRWYFRQPDIGAVLLSIDNDNNVYVKSYLFKLKSERKNIYVL |
| Ga0190346_1023613 | Ga0190346_10236132 | F050821 | MIVKDMYCDYCKQETLHECQSNELWRCVQCQNTRFEVIDIPQNEIDWEKPVRYLWRSGDIAYVTLALAPNVLKLDEMKELLEGRRIRIPLFRIKDKFLPKYY |
| Ga0190346_1034693 | Ga0190346_10346932 | F000352 | MPTIKLTDNDCIFVHYVLRMYAQQTPGLDQEDKDEIREVARKFREYE |
| Ga0190346_1039906 | Ga0190346_10399062 | F048033 | MIVTKLGDMIVVNVDKDNFYCEREGSNLVDIWEEHARYIGEEDTLYVRQVEGEKLTEDMQKLIKNFRNAGKTIEYMDKDRYD |
| Ga0190346_1055995 | Ga0190346_10559951 | F093027 | ILIALVLCIGSVSAFSSIDYSIQASDAVVSVNMKYSNILENETILGSQVVRLDHMDVTSAGMIMGDDTGVALNNTLRAVPVRNCLISSGMINQNFASAVRTNESYDLGVTGFRADGRMMDLASDVQAESGALSHVVRGQVAGSVGMGLITQTPTNRFESIVHSRSALQNVVM |
| Ga0190346_1058871 | Ga0190346_10588712 | F036471 | MQNRLNLWQRLKPECKEAIKEQYKKYTYRRADIKEELKSKEFFTEVSYGIAFDIMIPNKLSFLGDAFNPQVHE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |