NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021494

3300021494: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-2-3_MG



Overview

Basic Information
IMG/M Taxon OID3300021494 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129088 | Gp0215254 | Ga0190329
Sample NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-2-3_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size132448079
Sequencing Scaffolds4
Novel Protein Genes6
Associated Families6

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → Viruses → Predicted Viral2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biome → marine hydrothermal vent → sediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)N/ADepth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002525Metagenome / Metatranscriptome552Y
F009582Metagenome315Y
F016235Metagenome248Y
F027047Metagenome196Y
F044784Metagenome154Y
F054403Metagenome140N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0190329_1001143Not Available6620Open in IMG/M
Ga0190329_1004004All Organisms → Viruses → Predicted Viral2548Open in IMG/M
Ga0190329_1015367Not Available1126Open in IMG/M
Ga0190329_1016138All Organisms → Viruses → Predicted Viral1094Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0190329_1001143Ga0190329_10011434F044784MPKEFVGWEVELKDGTIIREGTMDWKKVPKKDIQRLSLFHFNNRRWDLTGKQAYFIKTRASMVPGVKESLRIEERTIGYYEGAQKIHYTVSESTGKFKMTVVKG
Ga0190329_1001383Ga0190329_100138313F054403MALDREDRLFIKEVGKKAARVLKTKNLRLWNEFKRRCDENGESPESVLGNYLYRFAKSILDEDGEFAEDLIGRTIRISALARKEGVLESLDEIIAVKKKLEDMGSSKIDKLIEKMIEVEISKAAITPMDMIRGGASEEKEGAVVLDENTLASLPPEQLELLEQ
Ga0190329_1004004Ga0190329_10040042F027047MDWYSLGIAVFSAIVYSLTMYVKKHLSSENPQDFDTAKFVTTVIWGAIVGVVLQMSGVPITEQNVEEQFAAYTGLIALTENIVKAIIRAIKS
Ga0190329_1015367Ga0190329_10153673F009582MRERGRRREFEGGTGRAVKEARVDVVLQRVEEEIGDEINAYPTHVRRYGVNNIFQRTFAYLLGWQSNGKPRKVGVTSGGLLKVAVSGAGFEQIDTLEGTAGVNWSSALSFAWTPNRIRFEALDYPYLAKFSIDGVTWSDEVYVDGGTPRDFDVNARYVKVRRYGGTNAKYFIIGMR
Ga0190329_1016138Ga0190329_10161383F016235MSEGKISSSPPLFSHKKGKHRQGYQRCVEYVGIDKNDDYYGRGFPLCAVVKFKIPVHRYTPRTYEIARLLATLKILYGEEYMEELLAWTELEYVRMRREGKWLTI
Ga0190329_1048132Ga0190329_10481322F002525VDSAWEQEKLEAKKLLENAAESHLSGARFVGRSLLRNI
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