NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021511

3300021511: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-18-1-2_MG



Overview

Basic Information
IMG/M Taxon OID3300021511 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129088 | Gp0215209 | Ga0190284
Sample NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-18-1-2_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size303118174
Sequencing Scaffolds32
Novel Protein Genes32
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales1
All Organisms → cellular organisms → Bacteria7
Not Available9
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Heimdallarchaeota → Candidatus Heimdallarchaeota archaeon2
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 11
All Organisms → Viruses → Predicted Viral3
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria → candidate division Zixibacteria bacterium1
All Organisms → cellular organisms → Archaea1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biome → ocean trench → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationMexico: Guaymas Basin
CoordinatesLat. (o)27.0074Long. (o)-110.591Alt. (m)N/ADepth (m)2001
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011939Metagenome / Metatranscriptome285Y
F012874Metagenome / Metatranscriptome276Y
F014681Metagenome / Metatranscriptome261Y
F023595Metagenome / Metatranscriptome209Y
F029273Metagenome / Metatranscriptome189Y
F031503Metagenome / Metatranscriptome182Y
F036102Metagenome / Metatranscriptome170Y
F054047Metagenome / Metatranscriptome140Y
F060598Metagenome / Metatranscriptome132Y
F063362Metagenome129Y
F064356Metagenome / Metatranscriptome128Y
F072876Metagenome121Y
F076639Metagenome118Y
F081868Metagenome114Y
F085587Metagenome111Y
F091298Metagenome / Metatranscriptome107Y
F092080Metagenome107Y
F092844Metagenome107Y
F100259Metagenome / Metatranscriptome102Y
F100426Metagenome102Y
F104458Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0190284_1000006All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales223015Open in IMG/M
Ga0190284_1000269All Organisms → cellular organisms → Bacteria34769Open in IMG/M
Ga0190284_1001872Not Available8924Open in IMG/M
Ga0190284_1002340All Organisms → cellular organisms → Bacteria7728Open in IMG/M
Ga0190284_1005200All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium4390Open in IMG/M
Ga0190284_1005637All Organisms → cellular organisms → Bacteria4128Open in IMG/M
Ga0190284_1006861Not Available3571Open in IMG/M
Ga0190284_1008566All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Heimdallarchaeota → Candidatus Heimdallarchaeota archaeon3019Open in IMG/M
Ga0190284_1008582All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon3016Open in IMG/M
Ga0190284_1012198All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Heimdallarchaeota → Candidatus Heimdallarchaeota archaeon2346Open in IMG/M
Ga0190284_1012486All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 12311Open in IMG/M
Ga0190284_1014887Not Available2047Open in IMG/M
Ga0190284_1015031All Organisms → Viruses → Predicted Viral2035Open in IMG/M
Ga0190284_1015329All Organisms → cellular organisms → Bacteria2009Open in IMG/M
Ga0190284_1016304Not Available1932Open in IMG/M
Ga0190284_1016585All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium1910Open in IMG/M
Ga0190284_1022124All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1591Open in IMG/M
Ga0190284_1022285All Organisms → Viruses → Predicted Viral1584Open in IMG/M
Ga0190284_1023479All Organisms → Viruses → Predicted Viral1530Open in IMG/M
Ga0190284_1030869Not Available1281Open in IMG/M
Ga0190284_1035718All Organisms → cellular organisms → Bacteria1167Open in IMG/M
Ga0190284_1037075Not Available1139Open in IMG/M
Ga0190284_1040618All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria → candidate division Zixibacteria bacterium1074Open in IMG/M
Ga0190284_1046602Not Available985Open in IMG/M
Ga0190284_1051900All Organisms → cellular organisms → Bacteria922Open in IMG/M
Ga0190284_1069986All Organisms → cellular organisms → Bacteria768Open in IMG/M
Ga0190284_1073453All Organisms → cellular organisms → Archaea747Open in IMG/M
Ga0190284_1076982All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria726Open in IMG/M
Ga0190284_1087145Not Available674Open in IMG/M
Ga0190284_1114368Not Available573Open in IMG/M
Ga0190284_1131723All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales527Open in IMG/M
Ga0190284_1137102All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria515Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0190284_1000006Ga0190284_1000006277F029273MDLLDEYLNILNEKPKRTTRSTISRNTKIKRATGQMGTAMARKKNDPIYKRMIYFRDNYFKYREMIRKKYSPRVRSRARR
Ga0190284_1000269Ga0190284_10002697F072876MEMSKQSYSDTMLMPVKRFQDYLKWKTDLEDEKQKMLLEGTS
Ga0190284_1001872Ga0190284_100187212F064356MIHGVKNKPVDESFTVSDIHGNLISGIDGTEFTVHVYDPTGTDVTASVSGFFTELGNGNYKYTFTPNLNKIWYVVVTHATYFPWGKTDDINVDETDLTGIYEIVIRTLGLSRHNIYIDEPTYDEFGNLVDARVRIYSDPASVGTVNDVIDTYRVTSDGTACGQFSFWRQVQV
Ga0190284_1002340Ga0190284_10023409F076639MKKTGTQSELEKAPICWMHEAIAYLGLDRLGLARPDLAVHRLIRKGALHPKKIGGHLAFDKAELQRLAANGDQKRGRGRPRKLA
Ga0190284_1005200Ga0190284_10052004F064356MIHGVKDQPVHENFTVSDSGGNLIAGIDTTTGFVPYVYDPTGTEVTGSVSGIFTELGNGNYRYTFTPNINGVWYINVTNQTYFPWGKNDDVYVDEADLTSVYEAVIRTLGLVHHNVYIDNTTYDEFGNMTAGRVRIYSDAASVGTNSNVIETYLITADGTECGKFSYWEQTKI
Ga0190284_1005637Ga0190284_10056377F072876LEKNVFACMEMSKQSYRETMLMPVKRFYNYLKWKNDLEEEKQKMMLEEVSKK
Ga0190284_1006861Ga0190284_10068614F029273MELLDEYLDILNEKPKRTTRSTISRNTKIKRATGQLGTAMARKKNDPLYKRMVYFRTQYFKYREMIRKKYTPRVRSRARR
Ga0190284_1008566Ga0190284_10085663F029273MSKIDPVTDHILNEIKTQSKTTISPQTKMKRASGQMASIEARKRNDPLYQRMQKYKDMYFKYRAMVHKKYGPRVRSKARR
Ga0190284_1008582Ga0190284_10085823F014681MRSFLDNTRAVIDLNIVLMIGVAFAALMVIAYIIWTLKAELVTTTTSAETNASIANITTGFDSAVNLLLVAVTIFILAIAISALLMLRGR
Ga0190284_1012198Ga0190284_10121982F029273MDDLLKEELKDLLSDEELSEARKRTSRTTVSRQTKIKRATGQMSSAAARKRNDPLYKRMIHFREKYYKYRAAIHKKYSPRVRSRARR
Ga0190284_1012486Ga0190284_10124862F011939MPEMTVEQIEEALRKEVQTIDKSVQLLAVKQSKKKEYYRVTLSKDGKSGSAELEKDVIKRYLSQQGKGKELRSALGKAVSHLSIRYQR
Ga0190284_1014887Ga0190284_10148872F092844MNIIAFFTNAGTPATGLNATVDIWKVDGTQVVTSQAMTEIAGGFYKYDFTTYDEDEDYCIRADGSATLTGSERYVFSTNETGGVGKILKIEKNKWEIKGNQMIFYDDDDTTVLYTFNLQNKAGSGTEKDVYKRVPV
Ga0190284_1015031Ga0190284_10150312F029273MSKGPEVDVLTQQILDEAPKRTTRHTVSRQTKIKRATGQLGTSMARKKNDPLYKRMVYFRTQYFKYREMIRKKYSPRVRSQARR
Ga0190284_1015329Ga0190284_10153292F023595MVDFGLQQGLSDFETTGIVSYVEDFKRAKTPLRAKRCRLWMDIT
Ga0190284_1016304Ga0190284_10163043F031503MDKREMQELFKATAEIHTPEGLAAYRAFAAALTTPILQKIELESIMRRLFAVERLAPGAQAVYPVAEDFEVPVWVLPGLGYMAQNFIEGIGEEVYVPTFAINSSADWKVTYARDSRVDIAQRAAARVAKDLANYEEECGWRVIMPAATASFSGKGLLGPRPAPIYEISPGATGAGYLSKE
Ga0190284_1016585Ga0190284_10165854F100259MAQNYLSGGGTVCLHAFEDMDGWTKVPASHTKSDQTYMPFGQGVEVTITRTNNAERIFGVGARNATATINKQFGGSFTINGVLSNAYWLLGVLGANADGGEAGAYTHTYTEADILPSFTTTQSFELGTTDFATDLIGCIINTCTISASVNEALKFTLEGIYRYENLGTTYVADLADTEPVFTFAHGSIEMPDGTDIAAIQSFELIINNNVEAVYGAGSRFMTAVVAKNREYNFSCTAAFNDYT
Ga0190284_1022124Ga0190284_10221241F091298MLEVISPAQALKRLSIGESIQDTRVTGLLDLDPLVVSRWLCGEDMRGIYQPIILHHCTLDGLDLEGRTFYEMVELVGCRIVAAYFKQAYFYSSLLVEDCVFERDFEGQGIQSDGRMVIHNTVFAGHADFSGISLRNRVNLLDVSFPGGTNLLHVLVDG
Ga0190284_1022285Ga0190284_10222853F064356MIHGVKDKPVDEHFTVSNTAGNLISGIDTTEFTVYTYNPSGTDLAGSLSDFFTELGDGSYKYTFTPNVNGIWYVNVTHPTYFPWGKTDDINVDETDITGVYEIVRRTLGLVHHNMFIDEAIYDEFGNMTSARVRIYADAASVGTNSNVVETYLITSDATACGQFDFWKQVVIP
Ga0190284_1023479Ga0190284_10234791F085587MALGIEQIDDFVAGIHQKFAGEDRLAAQDISLPLQEYKYASRLFSGNLKKDTMSTSQCKWKVKVDTNDNFQVVGLYHRDSSGRVNTLSEGELKWGLTTNNYHYDIDEEIFQTGGRQIYDYLEGLEQDLMTSFYTGMEGLMFGDGPTSPTQSPFPPVSLLWWITATDDSTSENNSEEGFNGYEPVGWGSNGVGGISCSTYEHWRNRTFPYTKVDRVDFVEKTINSMDLCQFSPPVQRPDIVDQKRHDWELLTTHSRLAQARQLLQLGNDNIGDDMAAHSGTVYIRGVPLTWVPAWTNTASANARTDGIILGVNWATFKAYYASGRQMRKRKAFQHPE
Ga0190284_1030869Ga0190284_10308691F036102MDRQEMMELFRATAEIQTPEGLAAYRAFAAALTTPILQKLELESIMRDLFAVERLGPGAQAVYPIAEDFEIPVWVLPGLGYVAQNFIEGIGEE
Ga0190284_1035718Ga0190284_10357183F104458MKRGWIAKYENGTTINENQMDWKEIPKVGIVQISLLFDGKRWDINNKVAYVQKKRASVVPGVADSFMIESRSIGYYEGTKKVWY
Ga0190284_1037075Ga0190284_10370751F060598GKIGNTGRVLKAEELVLAFDLDAKRWLALRVYQGAKKLSLSLPEIVAELRRHRGEGKGCWRLFFDKGGYKGQIFRDLAAMEDVHFYCPAVRYPDNVAQWERLMEEDFDPESFVFDKHADLPPEERPVYRLADTEMTVNVWENRRVVGTVTLRAVVIHDPQGQKPAERWPVVYLTDDRQIDARALANEFGDHWGQEFAHRIGKHDLCLDILPPGYTLTSQRDEEGQLQRQVEYDTTAFFLSAWLRCLVFNLMSLFAQELEGEYTRMWAGTLLRKFIRRPATLYLVGNELHVVFDPFPDQEALRPLLDRLNAKRVALSWLNGLVVQFSIAQDEPLHPLTEPEKRQRLFGDD
Ga0190284_1040618Ga0190284_10406183F064356MIHGVKDQPVHENFTVSDKHGNLITGIDTTAGFTSYVYNPLGAEVTGSVSGFFTELGDGNYRYTFTPDDNGVWYVNVTNQDYFPWGKNDDVYVDTSDLSGIYEIVRRTLGLVHHNMYIDQATYDEFGNMISARVRTYDDA
Ga0190284_1046602Ga0190284_10466022F063362MANFIVGIISLTLGVVVLAGVFITTVKGTNTTGWSAGEVALWGLLTIASIAGLVYGVMNVFGLA
Ga0190284_1051900Ga0190284_10519001F100426MARNRIIYASQSVWCNGEVLYRVQSLGSTTTFTSEDIFELGHLDIIDVVDDVPAVAVTLNTNDFGDVRTLA
Ga0190284_1069986Ga0190284_10699861F092080MQDKRVTIRIPFEIWKALRELQTVGKISSIQQAAVTGMNKLIESLKRGEEDNQRDAAKKRVLNVLVKEKPLGNWEDIHRERTEADADRS
Ga0190284_1073453Ga0190284_10734532F064356MIHGERNVPVDENFTVSDNGGNLVSGIDSTTFTVHVYDPTDAEVTVSVSGFFTELGDGNYQYTFTPNLNGVWYVVVTHPIYFPWGKTDDVKVDEGSQTQIYDAVIRTLGLVHHNIYIDNPTYDEYGNMTSGRVRIYSDAASVGTNNNVIETYLITADGTECGKFTYWEQTVL
Ga0190284_1076982Ga0190284_10769822F011939MPRLTIQLAEDTLRDEVHRLDKRVQLIGVSQGKKKDEYRVTLLKDGRTGSASIKKDIIKEYVAAEGKGNALRKALGKAVSHLSIQYR
Ga0190284_1087145Ga0190284_10871451F036102MERQEMQELFKATAEQTPEGQAAFRAFAAAITTPILQKIELESIMRQLFAVEQLAPGAQAVYPVAEDFEIPVWVLPGLGYMAQNFIEGIGEEVFVPTFAINASADWKVTYA
Ga0190284_1114368Ga0190284_11143681F081868MVNKKEETEKVMPVVSANSYGISAAIWNNTNKAGKEYQSISLNGSTKQPDGTYKNRTIFFPSDLENLIASLTELKE
Ga0190284_1131723Ga0190284_11317232F054047LKDSVGILRLGSNIGHGLFVGWVESAGLGFSAGGPTYLPAIFVLSAKPNKM
Ga0190284_1137102Ga0190284_11371021F012874MPAKAGIQKYLNILDSRLRGNDAKERFETFYDFVNIQ
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