NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021552

3300021552: Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', co15aic 200bp no Eukaryotes last



Overview

Basic Information
IMG/M Taxon OID3300021552 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0117787 | Gp0124802 | Ga0224709
Sample NameMarine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', co15aic 200bp no Eukaryotes last
Sequencing StatusFinished
Sequencing CenterUniversity of New South Wales
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size111140844
Sequencing Scaffolds23
Novel Protein Genes24
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota10
Not Available5
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium3
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Polychaeta → Sedentaria → Scolecida → Capitellidae → Capitella → Capitella teleta1
All Organisms → cellular organisms → Bacteria3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSeawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
TypeHost-Associated
TaxonomyHost-Associated → Porifera → Unclassified → Unclassified → Unclassified → Coelocarteria Singaporensis (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationUpa-Upasina CO2 seeps 'control' site, Papua New Guinea
CoordinatesLat. (o)-9.828217Long. (o)150.820517Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001905Metagenome619Y
F003751Metagenome / Metatranscriptome470Y
F013419Metagenome271Y
F027869Metagenome193Y
F028775Metagenome190Y
F036270Metagenome170Y
F038198Metagenome166Y
F067815Metagenome125Y
F072354Metagenome / Metatranscriptome121Y
F072439Metagenome121N
F080142Metagenome115Y
F085224Metagenome111N
F085818Metagenome111N
F098230Metagenome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0224709_1005519All Organisms → cellular organisms → Eukaryota1552Open in IMG/M
Ga0224709_1008644Not Available538Open in IMG/M
Ga0224709_1008899All Organisms → cellular organisms → Eukaryota568Open in IMG/M
Ga0224709_1009446All Organisms → cellular organisms → Eukaryota992Open in IMG/M
Ga0224709_1012696All Organisms → cellular organisms → Eukaryota755Open in IMG/M
Ga0224709_1026132All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium583Open in IMG/M
Ga0224709_1038117All Organisms → cellular organisms → Eukaryota630Open in IMG/M
Ga0224709_1042876All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1215Open in IMG/M
Ga0224709_1043899Not Available510Open in IMG/M
Ga0224709_1044467All Organisms → cellular organisms → Eukaryota576Open in IMG/M
Ga0224709_1060029All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium513Open in IMG/M
Ga0224709_1065881All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium512Open in IMG/M
Ga0224709_1070257All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Polychaeta → Sedentaria → Scolecida → Capitellidae → Capitella → Capitella teleta559Open in IMG/M
Ga0224709_1093106Not Available1103Open in IMG/M
Ga0224709_1095408All Organisms → cellular organisms → Bacteria678Open in IMG/M
Ga0224709_1102113All Organisms → cellular organisms → Bacteria564Open in IMG/M
Ga0224709_1106616All Organisms → cellular organisms → Eukaryota518Open in IMG/M
Ga0224709_1125612All Organisms → cellular organisms → Eukaryota919Open in IMG/M
Ga0224709_1127661All Organisms → cellular organisms → Eukaryota561Open in IMG/M
Ga0224709_1136277All Organisms → cellular organisms → Bacteria560Open in IMG/M
Ga0224709_1138127Not Available878Open in IMG/M
Ga0224709_1138690All Organisms → cellular organisms → Eukaryota552Open in IMG/M
Ga0224709_1140082Not Available563Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0224709_1005519Ga0224709_10055191F085224RFKAIVMFPYSIYSVTMLELLELGVPMFYPSKSLLKRWDGRYGMMWHRTDYYGQRKAGGFSNIAYGKDSAPDPNDSVNREALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLTKTSSTPA
Ga0224709_1008644Ga0224709_10086441F028775LKELKQKAKDVVMESGTPDSLAIALDQVSKKIGLRWNQDLQALPNFKN
Ga0224709_1008899Ga0224709_10088991F085224MVELLQMGVPMFYPSKSLLKRWDESYGMMFHRTNAFGERRAGGFSNVAYGKGAMPDPNDSVNREALHYWLEKSEWYNWDVRYFDSPADLHEKLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLTKTA
Ga0224709_1009446Ga0224709_10094462F085224SVFSGMMLELIQMGVPMFYPSKSLLKRWDEKYGMMFHRTNAFGERRAGGFSNIAYGKDSAPDPNDSVNQDALHYWLDKSEFYYWDVRCFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDARWAEIRRDLVKTSSTPA
Ga0224709_1012696Ga0224709_10126962F085224RPARLRHPRAHFRDYVTGISEAFNNFSYRDLLRFKAVVMFPYSVYSGVMIELIQMGVPMFYPSKRLLKRWDEKYGMMFHRTNAFGERRAGGFSNIAYGKDSAPDPNDSVNREALHYWLEKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDTRWAEIRRDLTKTSSTPA
Ga0224709_1026132Ga0224709_10261322F072439MSVLPRTQLGYTLGIRRDKDITSQGEKVPKNPFEESRGRTRMAGEKRVDIFAVRPDEAPFSYTKGTNLPKRFTQTLDIPIEKEEEA
Ga0224709_1038117Ga0224709_10381172F085224FSYQDLLRFKAIVMFPYSIWSGVMLELLEMGVPMFYPSKILLKRWHERYEMVYQRSSGGRRSAGGFSNIAYGADSAPDPNDGVNREALHYWLDKSEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLAKTSSTPA
Ga0224709_1042876Ga0224709_10428762F003751MASYTAEKGAILQPGNQINRLSSYNTEGVFGWPGFELYEMVGYVKVDNLSADKADNKSFNLTVPSPDRRSSDRVRDDRTSLVVQADADRPAYIYSASIAIGQDIPSAGEPSYPATPLTADIDGTNTEILLFGPDNSGSPRGVPATQADGLAAATAITTAFASGTIAQGESDVSVAEAPFWTSVTTAGIDDQDAANSMMYRVTSDTTFKVYNVNGVTSTTVDGDGVFISSADKDAGKAAYIICRVTYLRPAAATTCMDIVGSLDFASQVGGSDS
Ga0224709_1043899Ga0224709_10438992F085818FPVEIERGPFDNKYTPELLKHHIETGVLGLLRIKHNGRIIAGYVIRINVYPTAKRLLEILFIFGRNLNLRVGKQIFKKLEDLARQLKLDGIELTGRMQWNKVCDKLGFSDQQYIQRTKWLTY
Ga0224709_1044467Ga0224709_10444672F085224YPSKSLLKRWDESYGMMFHRTNAFRERRAGGFSNIAYGADSAPDPNDSVNPEALHYWLDKAEFYNWDVRYFGSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLTKTSSTPA
Ga0224709_1060029Ga0224709_10600291F072354RRPDDRVRDDRTSLVVQASTDRPAYIYGASVAIAQDLPAGGLATFPASPVTADLGGTTGELLLLGPNNGGVPFGVPSTQQNGLAAASSPIQASSSLIAQGLTDTTTGDLPFWTVVTGGGITAANAANSMMYKVTADTTFKVFNVDAIANTTVSGDGVFISQADSDAGRAA
Ga0224709_1065881Ga0224709_10658811F027869MEHAKAKKAKGKAEKALAQMMMEAEMVKASEADLQPEDGYINPMGRIGVVRPTTYSLTNQLDGTTTQSVIN
Ga0224709_1070257Ga0224709_10702571F085224RAALNGFSYQDLLRFKAIVMFPYSAFSGIMLELIEMGVPMFYPSKSLLKRWDESYGMMFQRTSGYGRRSSGGFSNIAYGKDLMPDPNDGVNREALHYWLEKSEWYNWDVRYFDSPADLHEQLKQADFEALHRDVLKTRARMDKIRDERWAEIKCDLTKTA
Ga0224709_1093106Ga0224709_10931062F080142MKVGAGEFIKTDSGEVIWGSEAFIDEVFKTLYGDDFRNEIWSYNDALQKIKNLVQQVEIK
Ga0224709_1093106Ga0224709_10931064F036270MHIESTDKQGVFRACKDGHKLLELINDMGWDYDRFSSSGQETYDKICTILATVKEVKDET
Ga0224709_1095408Ga0224709_10954082F013419MRESKYSFLYRNSDGHVMRPESFLNINKGRTLSSSQLRMLGIEKIKNPSYKRQATSIKRQAAST
Ga0224709_1102113Ga0224709_11021131F067815MENVNSTFLVLKIREDKNPKGETEITVAKGFDTLTDAKKYKDAKDSIERLTPMEYWVTSYKIQQIFYKSFVQTEKNSWKDLVSV
Ga0224709_1106616Ga0224709_11066161F085224RAALNGFSYQDLLRFKAIVMFPHSTFSGIMLELLQMGVPMFYPSKSLLKRWDESYGMMFQRTSGPGRRRAGGFSNVAYGKGSAPDPNDSVNQDALHYWLEKAEWYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRAQMDKIRDERWAEIRRDLTKTNSSGV
Ga0224709_1125612Ga0224709_11256121F085224MFPYSVFSVTMLELLQMGVPMYYPSKSLLKRWDERYGMMWHRTNSFRQRRAGGFSNIAYGKGSMPDPNDSVNRDALHYWLEKAEFYNWDVRYFDSPADLHEQLKQADFEAMHRDVLKTRARMDKIRDARWAEIRRDLAKSNSTPA
Ga0224709_1127661Ga0224709_11276612F085224FPYSAFSGIMLELLEMGVPMFYPSKRLLKRWDESYGMMFQRTSGYGRRSSGGFSNIAYGKDLMPDPNDGVNREALHYWLEKSEWYNWDVRYFDSPADLHEQLKQADFEALHRDVLKTRARMDKIRDERWAEIRRDLTKTA
Ga0224709_1136277Ga0224709_11362772F001905MKYPFYSRMTILLCVGGFSPIMIHHIIMKLWDVSTLRAAEFTFIVCIPIAFWMAEKINERWNDEDQ
Ga0224709_1138127Ga0224709_11381272F098230MTDSIIMAIYILCGLTIAAFGILLTGFYYFGDLTMPGIFAWVAPLMIPLGIVTIIVGEREAR
Ga0224709_1138690Ga0224709_11386901F085224GMMFHRTNAFGERRAGGFSNVAYGKGSMPDPNDGVNREALHYWLEKAEFYNWDVRYFDSPADLHEQLKAADFKAMHRDVLKTRARMDKIRDERWAEIKRDLAKTSSTPA
Ga0224709_1140082Ga0224709_11400821F038198QTKQYRYNKFLQVAMAIEKVTLKNVRVTVNFDIDLDTLKRYLETKERDFDDVMAIYDMICTQSDRLNEQGEPENIRAYFCIDPETYVLLEQQVKADLKKSYVTDSDHPHLRRIK
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