NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021563

3300021563: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-11-12_MG



Overview

Basic Information
IMG/M Taxon OID3300021563 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129088 | Gp0215278 | Ga0190353
Sample NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-11-12_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size35541007
Sequencing Scaffolds12
Novel Protein Genes16
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium3
Not Available4
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon1
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)N/ADepth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033663Metagenome176Y
F036512Metagenome169N
F038026Metagenome166Y
F040420Metagenome161Y
F048033Metagenome148N
F050064Metagenome145Y
F050821Metagenome144N
F055334Metagenome138N
F057027Metagenome136N
F069552Metagenome123N
F084956Metagenome111N
F089858Metagenome108Y
F093027Metagenome106N
F098395Metagenome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0190353_100001All Organisms → cellular organisms → Bacteria66547Open in IMG/M
Ga0190353_100004All Organisms → cellular organisms → Bacteria12182Open in IMG/M
Ga0190353_100147All Organisms → cellular organisms → Bacteria2393Open in IMG/M
Ga0190353_100351All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1778Open in IMG/M
Ga0190353_100370Not Available1747Open in IMG/M
Ga0190353_100455All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1632Open in IMG/M
Ga0190353_100903Not Available1330Open in IMG/M
Ga0190353_102565All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon942Open in IMG/M
Ga0190353_102758All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium918Open in IMG/M
Ga0190353_104402Not Available781Open in IMG/M
Ga0190353_109282All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium596Open in IMG/M
Ga0190353_110572Not Available569Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0190353_100001Ga0190353_10000120F036512MYWKVPDYLKKYIRIQDMLRNIFRPCDCGEELKKCIKDKEYFAKRAETLSRALAKSINLPEPPSPSEEMEEINPWKFITKYGKYDILTADKYYYTLPLNTWIKILSPIQTQVEKILPKWRVDVADCDDYALLMASFVAAVFAKPYYDKQVAFAITWSRSHAYNSFITTEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFMG
Ga0190353_100001Ga0190353_10000126F084956MKRRKRTRAICGIAICGYTICGDISYYLPTVSSSDIKGVAQITTPDGWFTYFFPLVRAEVILNQPYTDDSATITIVHNGQLLIDSDVSIHLGKGLKKVVFIGKIKSETQRTIMGKGNIMSELSCVSRFDELTHRYLKEGDQKDYHGTLSEVIQQFISVAGMDIESKSANDVDMVDLSFKYWELSLLDCLYRILGDKCMLYLDGNTLVIEDKSDEIKYTIDKNSKITDINVETSQEDSYRRCHVRGAKIGEDNAGNPIYVTGDAVDEMAASNKEIYIEDDTILTEWDARQRAERELKIRNELTDAIEITLADLVYPVFGNVRVNLPGIAKILELKSLRYTLDENGLFTTLYLGRSYKSLSTIFRSLK
Ga0190353_100001Ga0190353_10000183F048033MIVTRLGDMIVVNIDKDNFYCEREGSSLVDIWEEHARYIGEEDTLYVRQIEGEDLNEDMQKLIKKFRDAGKTIEYVDADRYDAYKGEVRFHTKNFEDEE
Ga0190353_100001Ga0190353_10000185F033663LIDVIKKGRSEIMQQESLRENVTQVYGIRCKVEDEKIQEWDYDSLTNITFLYKQRRALFEDIQEDGMAVPEFFFEIKRDMSMLRDLVLGKFNILLVIEEEN
Ga0190353_100004Ga0190353_1000043F057027MAKKWDRGVFEEARREVEEREKRIGFLFPPKNRGEEIHIEILDDTFTQVYEGEVGLDDREVGWTQPQILVRDLKDDRKKAFKLNSGLATQMWRVVENAGGDPLNMEGSVFTITSTGNYNYEVVYRKPAKEPEIVDESKIEEIVKKVMSGGNKSKEEIRLWVKEYLKVEGVQVSDVVINSVVDRVVG
Ga0190353_100147Ga0190353_1001473F040420MKILILLIMGILLSLSLNQFLVVDSTDSHPYVNGTYVCRDYSRDLILSASKYHIYLDYIYVPEKNHMMVGLYNPLEDSIEIIEPQTNEIIGCVSENCEDYIRIPVWNNQFYYLNLEV
Ga0190353_100147Ga0190353_1001474F036512MYWKVPDYLKKYIRIQDMLRNIFRPCDCGEELKKCIKDKEYFAKRAETLSRALAKSINLPEPPSPSEEMEEINPWKFIAKYGKYDILTADKYYYTLPLNTWIKILSPIQTQIEKILPKWREDVADCDDYALLMASFVAAVFAKPYYDKQVAFAITWSRSHAYNSFITTEGTWEIYEPQSNAIVGRLGKTTGIYRTEKIWFMG
Ga0190353_100351Ga0190353_1003511F069552MKKNRIAWFVVECTKPITIQLRCFKCRFTFPDVPRQLVKNFQSLGRGMYSLVFALKNIDCKEEYFFNNIIEGDVNSTGFGKADVELETTIPNDEEYQKFRRLINKWYEHKVDTFPFFLGIVMYSSYREWRKMKELGVRFLKLWQDGFSKIGWRPEDVSDYEYYFGKDGRSEL
Ga0190353_100370Ga0190353_1003704F055334MTSLVDKLNSVMDTLKTEIDDALSDYKVMHFIRFPSATDFFPVCFIVPTRITPIYRGGILEEDEYAIIEIEIHLVTRVPFDYRGTRLLEDLDAIMEKLRTLRHDDSKWYELDYKGGIDLEYSPIEKWILQSAVVHVKVEA
Ga0190353_100455Ga0190353_1004556F038026MLKFMIYKNENDYVLIIEYEDRAERLLASSMKDLIQVIADTTLYNFEGKSKYFEQSYHAKIEIV
Ga0190353_100903Ga0190353_1009031F084956MRKRTRAICGIAICGYTICGDISYYLPTVSSSDIKGVAQVTTPDGWFTYFFPLVRAEIILNQPFTDDNATITIVHNGQLLLDSDVSIHLGKGLKKVVFMGKIKSEAQRTIMGKGNIMSELNCISRFDELAHRYLKEGDQKDYHGTLSEVIQQFITVAGMDIENKSANDADMVDLSFKYWELSLLDCLYRILGDKCMLYLNGNTLVIEDKNDEIKYTIDKNSKITDINVETSQEDSYRRCHVRGAKIGEDSIGNPIYVTGDAVDEMATSNKEIYIEDDTVLTEWDARQRAERELKTKNELTDAIEITLADLVYPVFGKVRVNLPGIAKILELKSLRYTIDENGLFTTLYL
Ga0190353_102565Ga0190353_1025652F089858MEWVEYIVRLRFHVNGFIPEKLTKEYVDEQVRKKLSPRDLEGKGLMEIMVSEKGADGLLNIPLKDGSLWVEELKDGRLVLNLGDPDDPKITCLEAHLEHGDLMQETVKARDVRYVILGDIPDMGKARFVRVRKGIKQVELEGEE
Ga0190353_102758Ga0190353_1027582F050064MTPNRKFKNVDDLPLREYQKRYVLEWLAWKFYDLFLKLGIEDGYCKSYDPLLIEDDKCHSYVFDLDDGSRHHPYKNLRELEDKLFNEVVKRIKEESVH
Ga0190353_104402Ga0190353_1044021F093027MKLGILSILMALLLCIGTVSAFSSIDYSIQASDAVVSVDMSYSNILENETMLGSQAVRLDHMDVTSVGIIMGDDTGVVLNNTLKAMPVRNCLISSGMINQNFVSAIRTKDSYDLGVTGFRAGGRIMDLTSDVQAEQGALSHVVRGQVAGSVGMGLITQTPTNRFESIVHSRSALQNVVMNANWQTPQPAVEI
Ga0190353_109282Ga0190353_1092822F098395VITPLDLENFVKRIETLEEDSKLHDSLLHDVYENIDQMKKRLNELEKRIKYLESDRESYLKNNVLDE
Ga0190353_110572Ga0190353_1105721F050821MIVKEMYCEYCKQNVFHECQSNELWRCVQCQNTRFEIINIPQNEIDWERPVRYLWRSGDIAYVTSALAPNILRLDEMKELLEGERIR
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