Sample 3300021587

Basic Information
IMG/M Taxon OID	3300021587 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0129088 \| Gp0215276 \| Ga0190351
Sample Name	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-9-10_MG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300021587 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0129088 | Gp0215276 | Ga0190351

Sample Name

Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-9-10_MG

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	53786313
Sequencing Scaffolds	22
Novel Protein Genes	35
Associated Families	22

Dataset Contents

Total Genome Size

53786313

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → cellular organisms → Bacteria	8
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → unclassified Candidatus Altiarchaeales → Candidatus Altiarchaeales archaeon	2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon

All Organisms → cellular organisms → Archaea

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → unclassified Candidatus Altiarchaeales → Candidatus Altiarchaeales archaeon

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon

Ecosystem Assignment (GOLD)
Name	Microbial Communities From Sediments And Microbial Mats In Various Locations
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Ecosystem Assignment (GOLD)

Name

Microbial Communities From Sediments And Microbial Mats In Various Locations

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0114	Long. (^o)	-110.5956	Alt. (m)	N/A	Depth (m)	2011
Location on Map

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Location Information

Location

Mexico: Guaymas Basin

Coordinates

Lat. (^o)

27.0114

Long. (^o)

-110.5956

Alt. (m)

N/A

Depth (m)

2011

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F033663	Metagenome	176	Y
F036512	Metagenome	169	N
F040420	Metagenome	161	Y
F048033	Metagenome	148	N
F050064	Metagenome	145	Y
F050821	Metagenome	144	N
F055334	Metagenome	138	N
F056227	Metagenome	137	N
F057026	Metagenome	136	Y
F057027	Metagenome	136	N
F057809	Metagenome	135	N
F069552	Metagenome	123	N
F076704	Metagenome	117	N
F083514	Metagenome	112	Y
F084956	Metagenome	111	N
F084957	Metagenome	111	N
F093027	Metagenome	106	N
F096390	Metagenome	104	N
F098395	Metagenome	103	Y
F100149	Metagenome	102	N
F102256	Metagenome	101	N
F103293	Metagenome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0190351_1000001	Not Available	51352	Open in IMG/M
Ga0190351_1000007	All Organisms → cellular organisms → Bacteria	24054	Open in IMG/M
Ga0190351_1000022	All Organisms → cellular organisms → Bacteria	15727	Open in IMG/M
Ga0190351_1000042	All Organisms → cellular organisms → Bacteria	13175	Open in IMG/M
Ga0190351_1000081	Not Available	9343	Open in IMG/M
Ga0190351_1000084	All Organisms → cellular organisms → Bacteria	9211	Open in IMG/M
Ga0190351_1000144	Not Available	7418	Open in IMG/M
Ga0190351_1000392	All Organisms → cellular organisms → Bacteria	4501	Open in IMG/M
Ga0190351_1000405	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon	4411	Open in IMG/M
Ga0190351_1000741	All Organisms → cellular organisms → Archaea	3296	Open in IMG/M
Ga0190351_1000752	Not Available	3277	Open in IMG/M
Ga0190351_1001085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2708	Open in IMG/M
Ga0190351_1001551	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → unclassified Candidatus Altiarchaeales → Candidatus Altiarchaeales archaeon	2230	Open in IMG/M
Ga0190351_1001765	All Organisms → cellular organisms → Bacteria	2080	Open in IMG/M
Ga0190351_1002125	All Organisms → cellular organisms → Bacteria	1856	Open in IMG/M
Ga0190351_1002923	Not Available	1542	Open in IMG/M
Ga0190351_1011807	Not Available	712	Open in IMG/M
Ga0190351_1015524	Not Available	617	Open in IMG/M
Ga0190351_1017338	Not Available	583	Open in IMG/M
Ga0190351_1017345	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
Ga0190351_1018270	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Altiarchaeota → Candidatus Altiarchaeales → unclassified Candidatus Altiarchaeales → Candidatus Altiarchaeales archaeon	568	Open in IMG/M
Ga0190351_1018765	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	561	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0190351_1000001	Ga0190351_100000154	F057809	MQAWEIETRKGVSLFVGIPYIPTFRYTHCVVEDSWRNAWQPPNTIWRKNFAFGVATAREQLAEEFLATGYTHFLHLDCDIVLRQDTIARMLELDADVVVARYHDKSPLRLPQAFRHSQVPFRRDGPIDFKTNEIFEFPRPDGDVLLSGLGCVLVKREVFEKLKRPFYLFSSEHEELDDYDRVSEDFFFLLKVQNEAKVKVIYAPSISVGHVGEVIVWDKDNIQFI
Ga0190351_1000007	Ga0190351_100000712	F036512	MTTYWKVPDYLKRHLRIQDILKNIFKPCNCGEELKKCEKDKKYFARRAETLSKALAKSINLPEAPDPSKEMEEVNPWKFIAKCGKYDILTADKYYYTLPLNTWIKILSPIQTQVEKILPKWREDVADCDDYALLMASFVAAVFAKPYYDKQVAFAITWSRSHAYNSFITTEGTWEIYEPQSNAIVGRLGKTTGIYRTEKIWFMG
Ga0190351_1000007	Ga0190351_100000727	F096390	MADIIKEIINLFVYPITHEIEAHGKLLTDEEKEDLLKREKKRYERELIKIFEKYDRL
Ga0190351_1000007	Ga0190351_10000073	F084956	MKRRKRTRAICGIAICGYTICGDISYYLPTVSSSDIKGVAQITTPDGWFTYFFPLVRAEVILNQPFTDDNANITIVHNGQLLIDSDVSIHLGKGLKKVVFMGKIKSETQRAIMGKGNIMSELNCISRFDELAHRYLKEGDQKDYHGTLSEVIQQFITVTGMDIENKSANDADMVDLSFKYWELSLLDCLYRILGDKCMLYLDGNTLVIEDKSDEIKYTIDKNSKITDINVETSQEDSYRRCHVRGAKIGEDSAGNPIYVTGDAVDEMATSNKEIYIEDDTVLTEWDARQRAERELKTRNELTDAIEVTLADLVYPVFGKVRVNLPGIAKILELKSLRYTLDENGLFTTLYLGRSYKSLSTIFRSLK
Ga0190351_1000007	Ga0190351_10000076	F050064	MTPNRKFKNINDLPLNESQKRYVLEWLAWKFYGLLLKLGIEDGYYKSYDPLLIENNKCHSYVFDLDDDGKHHPYKNLREIEDKLFNEVVKRIKEESIH
Ga0190351_1000022	Ga0190351_100002212	F098395	MKIEVITPLDLEDFVKRIENLEEDSKLHDGLLNDAFENIDQMKKCLNELEKRIKDLESDREPYSKE
Ga0190351_1000042	Ga0190351_10000421	F093027	MKLGILSILMALLLCIGTVSAFSSIDYSIQASDAVVSVDMSYSNILENETMLGSQAVRLDHMDVTSVGIIMGDDTGVVLNNTLKAMPVRNCLISSGMINQNFVSAIRTKDSYDLGVTGFRAGGRIMDLTSDVQVEQGALSHVVRGQVAGSVGMGLITQTPTNRFESIVHSRSALQNVV
Ga0190351_1000042	Ga0190351_100004213	F057026	MGRDEQILVLEEMICLFEEAMKGLESAYEATEDENQKLKLTGGVLVFEFVINLMKKKVELLWN
Ga0190351_1000042	Ga0190351_10000427	F048033	MIVTRLGDMIVVNIDKDNFYCEREGSSLVDIWEEHARYIGKGDTLYVRQVEGEDLSEDMQKLIKKFRDAGKTIEYVDADRYDAYKGEVRFHTKNFEDEE
Ga0190351_1000042	Ga0190351_10000429	F033663	MQGTKTDNVTHVYGIRCKTKNEKIQEWDYDSLTNITFLYKQRRALFEDIQEDGMAVPEFFFEIKRDMSMLRDLVLGKFNILLVIEEEN
Ga0190351_1000081	Ga0190351_10000812	F084956	MRKRTRAICGIAICGYTICGDISYYLPTVSSSDIKGVVQVTTPDGWFTYFFPLVRAEVILNQPFTDDNANITIVHNGQLLIDSDVSIHLGKGLKKVVFMGKIKSETQRAIMGRGNIMSELNCISRFDELAHRYLKEGDQKDFHGSLSEVIQQFISVAGMDIESKSANDADMVDLSFKYWELSLLDCLYRILGDKCMLYLDGNTLVIEDKNDEIKYTIDKNSKITDINVETSEEDSYRRCHVRGAKIGEDSAGNPIYITGDAVDEMATSNKEIYIEDDTVLTEWDARQRAERELKTRNELTDAIEITLADLVYPVFGKVQINLPGIAKILELKSLRYTLDENGLFTTLYLGRSYKSLSTIFRSLK
Ga0190351_1000084	Ga0190351_10000845	F040420	MNTMNRCIVIGLMLSISLTQFLALDTTDTHSYIDGFYICRDFSRDLILSASKYHIYLDYIYVPEKNHMMVGLYNPLEHSIEIIEPQTDEIVEYVKEDNKHYIRIPVWNDYFYYSNVKIA
Ga0190351_1000084	Ga0190351_10000847	F036512	MYWKVPNYLKRYIKIQDVFKNIFKPCDCGEELKKCIKDKEYFARRAETLSRALAKSINLPEPPDPSKEMEEVNPWKFIAKYGKYDILTADKYYYTLPLNTWIKILSPIQTQIEKILPKWRVDVADCDDYALVMASFVAAVFAKPYYDKQVAFAITWSCSHAYNSFITSEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFMG
Ga0190351_1000084	Ga0190351_10000848	F102256	LEFYYENHVTHCPFCGNKVKYAGQIQESEIEGPIYTLKYSTGERMQKKIEEEEAIKEAEQSWYLWEE
Ga0190351_1000144	Ga0190351_10001443	F084957	MNIEDYKKKNTKKIKCPSGLEVTVNNITPYTLLKVVDNLGINPTREAVYTKPVIDALFKAFLKEPVIGRDIEIEDFLREDYIFLHDLIFERVTLPEE
Ga0190351_1000144	Ga0190351_10001446	F076704	MAEYGAVKGWSNRIRIGLESAPNESIWHDGRDPLLNSLTMDTSVDIDKIYVVGSRDAVSMIEGTQEVTGSLERNLYSKNATYNEFIYAGNNSFLDLLAATGMYGESLQSCKILMNTTSNSASADYNRVIYGVKFHSYRTSTAAGDMVTESVDYDATNISTH
Ga0190351_1000144	Ga0190351_10001447	F055334	MTSLVDKLNSVMDTLKTEIDDALSDYKVMHFIRFPSATDFFPVCFIVPIRITPIYRGGILEEDEYAIIEIEIHLVTRVPFDYRGTRLLEDLDAIMERLRTLRHDSKWYELDYKGGIDLEYSPIEKWILQSAVVHVKVEA
Ga0190351_1000392	Ga0190351_10003921	F100149	MMYWSKEEEEILKSLWKKPDITAKIIKERHLPHRSINAIQKKASSLGLTKEKIKIDYEKVNEIII
Ga0190351_1000392	Ga0190351_10003922	F098395	MKIEVITPLDLEDFVKRIETLEEDNKLHDDLLHDILENIDQIKKHLNGLEKRVEQLESDKELYPEA
Ga0190351_1000392	Ga0190351_10003927	F057027	MAKKWDRGVFEEARREVEEREKRIGFLFPPKNRGEEIHIEILDDTFTQVYEGEVGLDDREVGWTQPQILVRDLKDDRKKAFKLNSGLATQMWRVVENAGGDPLNMEGSVFTITSTGNYNYEVVYRKPAKEPEIVDESKIEEIVKKVMSGGNKSKEEIRLWVKEYLKVEGVQVSDVVINSVVDRVAG
Ga0190351_1000392	Ga0190351_10003928	F050821	MIVKDMYCDYCKQETLHECQSNEVWRCVQCQNTRFEIINIPQNEIDWEKPVRYLWRLGDIAYVTSTLAPNILRLDEMRELIEGERIRVPIFKIKDKFLPKYY
Ga0190351_1000405	Ga0190351_10004051	F033663	MENVTQVYGIRCKVEDDKIQDWDYDSLTNITFLYKQRRALFEDIQEDGMAVPEFFFEIKRDMSILRDMVMGKFNILLVI
Ga0190351_1000741	Ga0190351_10007412	F083514	LITVNAVCEKRKSGKTIIIGDITNLTVDINRFRKKYTREDLKDKDYRTINGLIPGPKAC
Ga0190351_1000752	Ga0190351_10007523	F084957	MKIEDYKKKNTKRVKCPSGLEVTVNNITPYTLLRIVDKLGINPTREEVYTKPVIDALFKAFLKEPVIGKDIEIEDFLREDYIFLHNLIFEKVTLPEE
Ga0190351_1001085	Ga0190351_10010851	F056227	CIIKKMEDKDNQILVFHRDKDDKNWISRLANGKIAILHRADPTTPQPNVPYLCKVDEKEKYAIAWIQSLHAYPRAIVTPPPRRFVYIGAPGEKPAIHTDILNIFDTHGLEYLYVKYPQENREEVKVPSTDYREVNIDLRIKIGSESTIKYSCTIKRPRNMDAKAILDEIKSKIE
Ga0190351_1001551	Ga0190351_10015514	F055334	MTSLVDKLNSVMDTLKTEIDDALSNYKVMHFLRFPTATDFFPVCFIVPTRITPIYRGGILEEDEYAIIEIEIHLVTRVPFDYRGTRLLRDLDAIMEKLRTLRHDDSKWYELDYKGGIDLEYSPIEKWILQSAVVHVKVEA
Ga0190351_1001765	Ga0190351_10017653	F093027	MKLGILSVLIALVLCIGSVSAFSSIDYIIQASDAVVSVNMKYSNILENETILGSQVVRLDHMDVTSAGMIIGDDSGVALNNTLRAVPVRNCLISSGMINQNFASAVRTNESYDFGVTGFRADGRMMDLVSDVQAESGALSHVVRGQVAGSVGMGLTTQTPTNRFESVVRSRSVLQNVMMNANWQMPQPAVEIEVPSSDISSLCVWATQSSYPVFPISA
Ga0190351_1002125	Ga0190351_10021254	F069552	MSFSGEKMKKNSIAWFVVECTKPITVQLRCFKCRFTFPDVPRQLVKNFQSLGKGMYSLVFALKNIDCKEEYFLNNIIEADVNSTGFGKADVELETTIPNDEEYQRLRRLINKWYEHKVDTFPFFLGVVMYSSYREWRKMKELGVKFLELWQDGFSKIGWKPEDVSDYEYYFGKDGRSTPPKFLGTTTSWD
Ga0190351_1002923	Ga0190351_10029234	F055334	MTSLVDKLNSVMDTLKTEIDDALSDYKVMHFIRFPSATDFFPVCFIVPTRITPIYRGGILEEDEYAIIEIEIHLVTRVPFDYRGTRLLEDLDAIMERLRTLRHDDSKWYELDYKGGIDLEYSPIEKWIL
Ga0190351_1011807	Ga0190351_10118072	F083514	MVLITVNAVCGRRKSVKTIIIRDTTNLTVDINRFRKKYRRKDLKDKDYRTINELIPGPKDIISA
Ga0190351_1015524	Ga0190351_10155241	F093027	MKLGILSILMALLLCIGTVSAFSSIDYSIQASDAVVSVDMSYSNILENETMLGSQAVRLDHMDVTSVGIIMGDDTGVVLNNTLKAMPVRNSLISSGMINQNFVSAIRTKDSYDLGVTGFRAGGRIIDLTSDVQAEQGALSHVVRGQVAGSIGMG
Ga0190351_1017338	Ga0190351_10173381	F057027	PPKNRGEEIHIEILDDTFTQVYEGEVGLDDREVGWTQPQILVRDLKDDRKKAFKLNSGLATQMWRVVENAGGDPLNMQGSVFTITSMGNYNYEVVYRKPAKEPEIVDERKIEDIVKKVISSGNIPKENISLWVKEYLKVEGLEVPEAVIESVVNRVVG
Ga0190351_1017345	Ga0190351_10173451	F102256	MEREKTNVYSCRNCYLEFYYENRITHCPFCGNKLKLIGRIQENEIEGPIYTLKYSTGEKMQKKIEEEEAIREAEE
Ga0190351_1018270	Ga0190351_10182702	F076704	SAPNESIWHDGRDPLLNSLTMDTSVDIDKIFVVGSRDAVSMIEGVQEVTGTLERNLYSKNATYNEFIYAGNNSHLDLLAATGMYGESLQSCKILMNTTSSSNSADYNRVIYGVKFHSYRTSTAAGDLVTESVDYDATNISTH
Ga0190351_1018765	Ga0190351_10187651	F103293	MIEIEKLKPLSAPYEIFEFVPCQPAYFKITQYEIGRITISPRFPGAPPTKEIAAVRLHVDPATKPYFPHYWDITPSRLVHQLAGLLATELPPGMYLRIHRDIPGPRAHFSVSWAERPP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300021587: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-9-10_MG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences