NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300021588

3300021588: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-18-2-3_MG



Overview

Basic Information
IMG/M Taxon OID3300021588 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129088 | Gp0215210 | Ga0190285
Sample NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-18-2-3_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size95272852
Sequencing Scaffolds12
Novel Protein Genes12
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available6
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota1
All Organisms → cellular organisms → Archaea3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → unclassified Mycoplasmatota → Mycoplasmatota bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biome → ocean trench → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationMexico: Guaymas Basin
CoordinatesLat. (o)27.0074Long. (o)-110.591Alt. (m)N/ADepth (m)2001
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033662Metagenome176Y
F036102Metagenome / Metatranscriptome170Y
F064356Metagenome / Metatranscriptome128Y
F081982Metagenome113N
F085223Metagenome / Metatranscriptome111Y
F089858Metagenome108Y
F094956Metagenome / Metatranscriptome105Y
F100148Metagenome102N
F102489Metagenome101Y
F104458Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0190285_1000009Not Available35025Open in IMG/M
Ga0190285_1000041Not Available23284Open in IMG/M
Ga0190285_1000678All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota7975Open in IMG/M
Ga0190285_1001828All Organisms → cellular organisms → Archaea4166Open in IMG/M
Ga0190285_1003614All Organisms → cellular organisms → Archaea2513Open in IMG/M
Ga0190285_1006928Not Available1622Open in IMG/M
Ga0190285_1015671Not Available967Open in IMG/M
Ga0190285_1016577All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → unclassified Mycoplasmatota → Mycoplasmatota bacterium934Open in IMG/M
Ga0190285_1019308All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi854Open in IMG/M
Ga0190285_1029583Not Available656Open in IMG/M
Ga0190285_1036643All Organisms → cellular organisms → Archaea574Open in IMG/M
Ga0190285_1041700Not Available530Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0190285_1000009Ga0190285_100000958F102489MTTKGSLHQREAAQEYKKRGWKVYMPQKVSRYGTQDIFNMFDFVAISPDGSEIDFVQVKTGSTRGFLKKLKDWRETHKVKKVKWLLMVRKDARKYKRKWDVYD
Ga0190285_1000041Ga0190285_100004110F102489MTTKGSLHEREAAQEYEALGWTVYRPPKTRYGTQDIFGMFDLIAISPPSPNGCEIHFVQVKSNSTGGFLKKLKNWREKHKVKEVKWLLMVRLDARKFKRKWKVYR
Ga0190285_1000678Ga0190285_100067813F100148MEKLEALSRGYSLEEIIEYEQLRGIALIKDLETGVEKIYSHSFAKFLEDRNLAEIICVADTVQELMRNRRETARRVTQDRVDKMTRVIERLEKLLESSRSERRRFLDEARIIKRS
Ga0190285_1001828Ga0190285_10018286F089858MEWIEYLVRLRFHINGFYEDKLGKEYVEREIRKKLSIPELEERGWMEIMVSEKGADGLLNIPVKGLELWVEKRKDGRLVLNLGDPDDPKLTCIEVEVEHKDLTMETIKAKDVKYVILGDIPEMGRARLVRIRRPIKVVEVEEEGDE
Ga0190285_1003614Ga0190285_10036142F033662MGGIGKLVSTVIILAISLMLGIAVSHLVISFSKHYTRVEVIASSAHHGDPSIVVVIKNLGGNTLSITDLHLNKIPIASLIGDSIQSINPDITKSSIQVKPGERREIRIDLNPSKWSGGEIVEILIITSSGNKYYAIVNLS
Ga0190285_1006928Ga0190285_10069282F081982MASNIFEGVYRIVHVDANDNTIADLIEMRSEQFGIADAASGTEATYETDLQKLPKLPKVNDILAQDDKLVIKVKADADVGVDVSDEGQYILVPVTMRNARTGVVYPRILAYVDFTDDIDADTTLKAGKWYNWLHYTIPAQTELKLGVSMPDVRTASALSLQWDPDITD
Ga0190285_1015671Ga0190285_10156711F081982MASNIFEGVYRIVHVDANDNTIADLIEMRSEQFGIVDAASGTEATYEKDLQKLPKLPKVNDILAQDDKLVIKVKADADVGVDVSDEGQYILVPVTMRNARTGVVYPRILAYVDFTDDIDADTTLKAGKWYNWLHYTIPAQTELKLGVSMPDVRTASALSLQWDPDITD
Ga0190285_1016577Ga0190285_10165773F104458MRRGWEVEFIDGTTMNESQKSWKQVPKVGIIRLTLHYDGRQWDIHNKGAYLQKKRGSMVPAKPETFRVESRSIGYYEGASKVWYTVDENTGRMRMEVEDI
Ga0190285_1019308Ga0190285_10193081F085223MTSVNETKQKRQNRTVTLYLGNTLAEYQEMISTEEGMQTLIQQVETADSLNWGHLADGHHEGCPRRLRFTHHDGYTRWTKHFDGTQELVTIIRVRCLDCEAVFTIQPSFIVRYKRYDTDAMEKFMVLLFITEDSYRMAGVGQALGMDTHQEGTWVALEKAGQDAISPTSLWGLVQWLGQLSPAQLNLALGVEPPTHIIEDEKHMKECGEKVYVPIVYAPKEALIWWTDYIDSVSEDSLLSSLERFKAISE
Ga0190285_1029583Ga0190285_10295831F094956MLAGDILMSPSVAPPAAKPREPGTIATAVTELTARCILQYVLNVVKNAKCPSSLERAGPYIVVIATARLNWLVDNNSM
Ga0190285_1036643Ga0190285_10366432F064356MIHGVKDQPVHENFTVSDKHGNLITGIDTTAGFTSYVYNPLGAEVTGSVSGFFTELGDGNYRYTFTPDDNGVWYVNVTNQDYFPWGKNDDVYVDTSDLSGIYEIVRRTLGLVHHNMYIDQATYDEFGNMISARVRTYDDAANVGTDVGVIETYM
Ga0190285_1041700Ga0190285_10417001F036102MELKEMQELFRATAEKGPEGQAAFRAFAAAITTPILQKIELESLMRQMFAVERLAPGAQAVYPVAEDFEIPVWVLPG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.