NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021589

3300021589: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-13-14_MG



Overview

Basic Information
IMG/M Taxon OID3300021589 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0129088 | Gp0215280 | Ga0190355
Sample NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-13-14_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size44940317
Sequencing Scaffolds32
Novel Protein Genes38
Associated Families26

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria10
All Organisms → cellular organisms → Archaea3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon3
Not Available7
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata1
All Organisms → Viruses → Predicted Viral3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanophagales → unclassified Methanophagales → Methanophagales archaeon1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division Kazan-3B-28 → candidate division Kazan bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biomemarine hydrothermal ventmicrobial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)N/ADepth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027047Metagenome196Y
F033663Metagenome176Y
F036512Metagenome169N
F038026Metagenome166Y
F040420Metagenome161Y
F048033Metagenome148N
F050821Metagenome144N
F055334Metagenome138N
F056227Metagenome137N
F057027Metagenome136N
F057809Metagenome135N
F059532Metagenome133N
F062402Metagenome130Y
F069552Metagenome123N
F080879Metagenome114Y
F084956Metagenome111N
F084957Metagenome111N
F088030Metagenome109N
F093027Metagenome106N
F094688Metagenome105N
F096388Metagenome104N
F096389Metagenome104Y
F096390Metagenome104N
F100149Metagenome102N
F102256Metagenome101N
F102257Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0190355_100027All Organisms → cellular organisms → Bacteria7987Open in IMG/M
Ga0190355_100028All Organisms → cellular organisms → Bacteria7833Open in IMG/M
Ga0190355_100097All Organisms → cellular organisms → Archaea5196Open in IMG/M
Ga0190355_100195All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium4046Open in IMG/M
Ga0190355_100296All Organisms → cellular organisms → Bacteria3379Open in IMG/M
Ga0190355_100342All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon3231Open in IMG/M
Ga0190355_100661Not Available2485Open in IMG/M
Ga0190355_100759Not Available2305Open in IMG/M
Ga0190355_100908Not Available2124Open in IMG/M
Ga0190355_100965All Organisms → cellular organisms → Bacteria2066Open in IMG/M
Ga0190355_101040All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia1989Open in IMG/M
Ga0190355_101168All Organisms → cellular organisms → Archaea1881Open in IMG/M
Ga0190355_101556All Organisms → cellular organisms → Bacteria1638Open in IMG/M
Ga0190355_101591Not Available1618Open in IMG/M
Ga0190355_101826All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata1513Open in IMG/M
Ga0190355_102077All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1426Open in IMG/M
Ga0190355_102198All Organisms → Viruses → Predicted Viral1391Open in IMG/M
Ga0190355_102574Not Available1290Open in IMG/M
Ga0190355_102991All Organisms → cellular organisms → Bacteria1203Open in IMG/M
Ga0190355_103328All Organisms → Viruses → Predicted Viral1146Open in IMG/M
Ga0190355_103491All Organisms → cellular organisms → Archaea1122Open in IMG/M
Ga0190355_103642All Organisms → Viruses → Predicted Viral1100Open in IMG/M
Ga0190355_104920All Organisms → cellular organisms → Bacteria951Open in IMG/M
Ga0190355_105719All Organisms → cellular organisms → Bacteria883Open in IMG/M
Ga0190355_106740All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanophagales → unclassified Methanophagales → Methanophagales archaeon820Open in IMG/M
Ga0190355_107538All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon778Open in IMG/M
Ga0190355_108519Not Available737Open in IMG/M
Ga0190355_109614All Organisms → cellular organisms → Bacteria698Open in IMG/M
Ga0190355_110589All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division Kazan-3B-28 → candidate division Kazan bacterium668Open in IMG/M
Ga0190355_113656Not Available597Open in IMG/M
Ga0190355_114357All Organisms → cellular organisms → Bacteria584Open in IMG/M
Ga0190355_117738All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon532Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0190355_100027Ga0190355_1000272F033663LIDVIKKGRSEIMQQESLRENVTQVYGIRCKVEDEKIQEWDYDSLTNITFLYKQRRALFEDIQEDGMAVPEFFFEIKRDVSILRDLVLGKFNILLVIEEEN
Ga0190355_100027Ga0190355_1000276F096388MIRIPILDNREDRNWFHQFEHPVYIMLGGNNKLVERKLKQDMKLLKWREWWKNPRKKIDLLSGTEDGYRWRVRLLVNSFGDMSVVFDFS
Ga0190355_100028Ga0190355_10002816F040420MKILILLIMGILLSLSLNQFLVVDSTDSHPYINGTYVCRDYSRDLILSASKYHIYLDYIYVPKKNHMMVGLYNPLEDSIEIIEPQTDEIIGCVSENCEGYIRIPVWNNQFYYLNLKV
Ga0190355_100097Ga0190355_1000977F055334MTSLVDKLNSVMDTLKTEIDDALSNYKVMHFLRFPTATDFFPVCFIVPIRITPIYRGGILEEDEYAIIEIEIHLVTRVPFDYRGTRLLEDLDAIMERLRTLRHDDSKWYELDYKGGIDLEYSPIEKWILQSAVVHVKVEA
Ga0190355_100195Ga0190355_1001959F056227MEDKDNQVLVFHRDKDDKNWISRLANGKIAILHRADPTTPQPNVPYLCKVDEKEKYAIAWIQSLHAYPRVIITPPPRRFVYIGAPGEKPAIHTDILSIFDTHGLEYLYVKYPQENREEVKIPSTDYRDVNIDIRIKIGSESTIKYSCTIKRPRNMDAKTILDEIKSKIE
Ga0190355_100296Ga0190355_1002962F050821MIVKEMYCEYCKQNVFHECQSNELWRCVQCQNTRFEIINIPQNEIDWEKPIRYLWRSGDIAYVTSALAPNILRLDEMKELLEGERIRVPLFKIKDRFLSKYY
Ga0190355_100296Ga0190355_1002963F057027MAKKWDRGVFEEARREVEEREKRIGFLFPPKNRGEEIHIEIVDDTFTQVYEGEVGLDDREVGWTQPQILVRDLKDDRKKAFKLNSGLATQMWRVVENAGGDPLNMQGSVFTITGMGNYNYEVVYRKPAKEAEIVDEKKIEDIVKKVMSDGNKSKDEIFLWVKEYLKVEGVRVSDVIIKSVVDRVVG
Ga0190355_100342Ga0190355_1003422F084957MNIEDYKKKNTKKIKCPSGLEVTINNITPYTLLRIVDKLGINPTREEVYTKPVIDALFKAFLKEPVVGKDIEIEDFLREDYIFLHNLIFERVTLPEE
Ga0190355_100661Ga0190355_1006612F084956MRKRTRAICGIAICGCTICGDISYYLPTVSSSDIKGVAQITTPDGWFTYFFPLVRAEVILNQPYTDDSATITIVHNGQLLIDSDVSIHLGKGLKKVVFMGKIKSETQRTIMGKGNIMSELSCISRFDELAHRYLKEGDQKDYHGTLSEVIQQFITVAGMDIENKSANDTDMVDLSFKYWELSLLDCLYRILGDKCMLYLDGNTLVIEDKSDEIKYTIDKNSKITDINVETSQEDSYRRCHVRGAKIGEDSAGNPIYVTGDAVDEMATSNKEIYIEDDTVLTEWDARQRAERELKIRNELTDAIEVTLADLVYPVFGKVRVNLPGIAKILELKSLRYTLDENGLFTTLYLGRSYKSLSTIFRSLK
Ga0190355_100759Ga0190355_1007591F027047MDWGSLAIAVFSAIVYSLTMYVKKHLNSENPQSFDVAKFITTVIWGIIVGVALQMSGVPITEQAVEEQFAAYTGLITITENVVKAIIRAVRK
Ga0190355_100882Ga0190355_1008821F096389MVENASVVTFGNNASAMVISYECDYRTGNVPIDILGRNRNDYQDLGLFPTEHHFTLFVENNSQYRNLLQELYKHEEIEFGYNESTKFYGVPTHIHKHPMQAGKIEDLYIVDVDVLSTDPLRYGKKFEASRALTSESGSFNLPAVIGDTKTPISLHFDVYGVNKKTVTGSDTGSYLLFGRKDQLGFDHLYMHHIFIPRWKDFWDNFDWQWNYILPPLNSTTGTIPCGDGEVKWTWGIQPSPHSLNHPDIIQFLWLKDD
Ga0190355_100908Ga0190355_1009083F036512MGGIIKMYWKVPNYLKRYIRIQDVLKNIFKPCDCGEELKKCEKDKKYYAKRAETLAKALAESISLPEPPNPSKEMEEVNPWKFVAKYGKYDILTADKYYYTLPLNTWIKILSSIQTQVEKILPKWRVDVADCDDYALLMASFVAAVFAKPYYDKQVAFAITWSRSHAYNSFITSEGTWEIYEPQSNAIVGRLGKTTGTYKTEKIWFMG
Ga0190355_100965Ga0190355_1009654F102257MGYYVSNIIGIRTGGVFSGEKDVDDIKQRIKKIVLEMREESEKKRGEVFEPDLGWQDGDPSHCMCDKELVGSKGSYVVLAGVFNYWTFNKAEQFAKRLSEEFGTHVMLMSWDEEHDIIKSDVYLGGKSIREVNEDLISGIFRRIV
Ga0190355_101040Ga0190355_1010402F088030MDTTYRIRLIVAVAVASVALTIAVAGIASANPPVPPPNETSLIETSTDVTVSGTYYEETTFDWTYSTKELNDTLENDERVAQIQYDAHTSATDGYFEIKKEFTADGQNTPNLKVDGKIGFVKGDAVTSSLDLTENVGMSNVAEGDTAGGTGVGALCPWAQNACIPPTNTFVAAGSQLKDVTLVNSHTITTVATTESPQVHHEITAKGPIVEGGNETMGMGTIAAGMKVSTMEGLNCNRSHPLASRLTYSELSTATGAWKFIKSMTHTAQIPVINEPNTYPMFPF
Ga0190355_101168Ga0190355_1011682F093027MKLGILSVLIALVLCIGSVSAFSSIDYIIQASDAVVSVNMKYSNILENETILGSRVVRLDHMDVTSAGMIIGDDSGVALNNTLRAVPVRNCLISSGMINQNFASAVRTNESYDFGVTGFRADGRMMDLVSDVQAESGALSHVVRGQVAGSVGMGLTTQTPTNRFESVVRSRSVLQNVMMNANWQMPQPAVEIEVPSSDISSLCVWATQSSYPVFPISA
Ga0190355_101556Ga0190355_1015566F100149MYWSKEEEEILKSLWKKPDMTAKIIKERHLPHRTINAIQKKASSLGLTKEKIKIDYGKVNEIII
Ga0190355_101591Ga0190355_1015912F084956MKRRKRTRAICGIAICGYTICGDISYYLPTVSSSDIRGVAQITTPDGWFTYFFPLVRAEVILNQPYTDDNATITIVHNGQLLIDSDVSIHLGKGLKKVVFMGKIKSETQRTIMGKGNIMSELNCISRFDELAHRYLKEGDQKDFHGTLSEVIQQFISIAGMDIENKSANDADMVDLSFKYWELSLLDCLYRILGDKCMLYLDGNTLVIEDKNDEIKYTIDKNSKITNINVETSQEDSYRRCHVRGAKIGEDSAGNVIYVTGDAVDEMATSNKEIYIEDDTVLTEWDARQRAEQELKTRNELTDAIEVTLADLVYPVFGKVRVNLPGIAKILELKSLRYTLDENGLFTTLYLGRSYKSLSTIFRSLK
Ga0190355_101826Ga0190355_1018263F050821MYCDYCKQETLHECRSNEVWRCVQCQNTRFEIINIPRNEIDWEKPVRYLWRSGDIAYVTSALAPNVLKLDEMKELLEGKRIRIPLF
Ga0190355_102077Ga0190355_1020774F038026MIYKNEDEYVLIIEYEDRAERLLASSVKDLIQVIADTTLYNFEGKSKYFEQSYHAKIEIT
Ga0190355_102198Ga0190355_1021981F036512IFRPCDCGKELKKCIKDKEYFAKRAEILSRALAKSINLPEPPDPSKEMEEVNPWKIIAKYGKYDILTADKYYYTLPLNSWIKILSPIQTQVEKILPKWREDVADCDDYALLMASFVAAVFAKPYYDKQVAFAITWSHSHAYNSFITTEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFM
Ga0190355_102574Ga0190355_1025742F084957CPSGLEVTVNNITPYTLLRIVDKLGINPTREEVYTKPVIDALFKAFLKEPVIGKDIEIEDFLREDYIFLHNLIFEKVTLPEE
Ga0190355_102991Ga0190355_1029911F094688YVRATHSDKSILKEYSQIETLRVVEIHDELEPYRITRLQGPWIQGHYELNAKVSDKFTFDPFENIYNSYYEKSGGISISPSLVNLGSGSITYLISPNLPIIEIPTLYLEGSVSHIYVSGDNEDFYEVSFVPNYTGYVGSSEIDIRGRERFFLKLQGGSFSALHVGCNLGSVYNPLPWAVPNGPTTYYYSKDKNIDVNLHVEYRAAYYT
Ga0190355_103328Ga0190355_1033282F040420MDTTDTHSYIDDIYICRDFSRDLILSASKHHIYLDYIYVPAKNHMVVGLYNPLEQSIEIIEPQTDEIVGCIKENNKHYIRIPVWDTHVYYSNIKIA
Ga0190355_103328Ga0190355_1033284F036512DKEYFAKRVETLSRALAKSINLPEPPNPSKEMEEVNPWKFITKYGKYDILTADKYYYTLPLNTWIKILSSIQTQVEKILPKWRVDVADCDDYALVMASFVAAVFAKPYYDKQVAFAITWSRSHAYNSFITSEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFMG
Ga0190355_103491Ga0190355_1034912F057809YTHCVVEDSWRNAWQPPNTIWRKNFAFGVATAREQLAEEFLATGYTHFLHLDCDIVLRQDTIARMLELDADVVVARYHDKSPLRLPQAFRHSQVPFRRDGPIDFKTNEIFEFPRPDGDVLLSGLGCVLVKREVFEKLKRPFYLFSSEYEHLDDYNRVSEDFFFLLKVQNEAKAKVIYAPSISVGHVGEVIVWDKDNIQFI
Ga0190355_103642Ga0190355_1036423F033663MVQESSEENTTQVYGIRCKVKNDKIQDWDYDSLTNITFLYKQRRALFEDIQEDGMAVPEFFFEIKRDMLILRDLVLGKFNILLVIEEEN
Ga0190355_104920Ga0190355_1049202F048033MIVTKLGNMIVVNVDKDNFYCEREGSNLVDIWEEHARYIGEEDTLYVRQVEGEKLTDDMQKLIKNFRNAGKTIEYMDKDRYDVYKGEVQFHTENFEEE
Ga0190355_105719Ga0190355_1057191F094688VEVDTKIYGKQKETAQYVRATHSGKSILKEYSQIETLRVVEIHDELEPYRITRLQGPWIQGHYELNAKVGDKFTFNPFENIYDSYYEKMGEVSISPSLVNLGSGSITYLISPNLPIIEVPTFYLAGSVSHAYVSGNNEDFYEVSFVPNHTGYIGSSEIDLRGRERFFLKLQGGSFSALHISCDLGSVYNPLPWAVPNGPTIYYYSKDKDIDVDLHVEYRAAYYI
Ga0190355_106740Ga0190355_1067401F088030TTYRVRLIVAVAVASVALTIAVAGIASASPPVPPPNETSLIETSVDATVYSGTYYEEESFDWTYSTKELNDTLENEERVAQIRYDERTSATDGYTEFKKEFTADGQNTPNLVVDKKIGFVAGTAVTSSLDSTENTGMTIVTEGDSAGGTGVGALCVWAQDACIPPTNELVAAGSQLKDVTLVNSHTITTVKTTESPQLHHEITAGGPTVEGGNMTAGMGTVAAGMKVSAMEGLNCNDTHPLASRLTYNELSRATGMWKFAKSMTYTAQIPRIS
Ga0190355_107538Ga0190355_1075382F062402MWWVLLGSVAGLAVSSLMMVYWFSRLRLAIAERGWKYTAWLGALPWVLVLFNSAHVLLRELTCIQKGGTVDIALLYILAAVDWIILATVGIGIILDAVIRHANL
Ga0190355_108238Ga0190355_1082381F059532HDQLQCAIKLLKPVTKGKKVVVITGSRYHSSIDYDIDRGLAEVLHAKFGGAISNIRLKGTDVVINIAHGIGSRPIYTGTRMNQDVFNAILTEHLLKMPEVSVIIRAHFHIFSYFAIYDKHFIYIPGWNAIRKGRFITRWYFRQPDIGAVLLSIDNDNNVYVKPYLFKLKSERKNIYVL
Ga0190355_108519Ga0190355_1085192F096390MADIIKEIINLFVYPITHEVEAHGKLLTDEEKEEMLQRAKKRYERELIRIFEKHDRL
Ga0190355_109614Ga0190355_1096142F069552TKSITIQLRCFKCRLMFPDVPRQLVKNFQSLGRGIYSLVFALKNIDCEEEYFLNNIIETHVNSTGFGKANVEVDTTIPNDEEYQKLRKLIDDWYKQKVDTFPFFLGIIMYSSYRDWRRMKELGVKFLELWQDGFSKIGWKPEDVSDYEYYFGKDGRSEPPKFLGTHTYWD
Ga0190355_110589Ga0190355_1105891F096390MADIIKEIINLFVYPITHEIEAHGKLLSDEEKQDLLEKEKKRYERELIRIFEKYDRL
Ga0190355_111602Ga0190355_1116021F059532IKLSPLQEELYDKWLLLQEKLPDYEAVFLLGDITHGLGSKDFGKDVIDCDLHDQLQCAIKLLKPVTKGKKVVVITGSRYHSSIDYDIDRGLAEVLHAKFGGAISNIRLKGTDVVINIAHGIGSRPVYTGTRMNQDVFNAILTEHLLKMPEVSVIIRAHFHIFSYFAIYGKHFIYIPGWNAIRKGRFVTRWYFRQPDIGVVLLSIDDDNNVYVK
Ga0190355_113656Ga0190355_1136561F050821MIVKEMYCDYCKQETFHECQSNELWRCIQCQNTRFEIINIPQNEIDWERPVRYLWRSGDIAYVTLALAPDILRLDEMKELLEGKRLRVPLFKIKDKFLPKYY
Ga0190355_114357Ga0190355_1143571F102256MNRYKLNVYSCKNCYLEFYYENHITHCPFCGNKLEYIGRVHENEIEGPIYTLKYSTGEKMQKKIEEEEAIKEAEESWYL
Ga0190355_117738Ga0190355_1177381F080879MKVEKPEKIVGYVLLVIGLIFIIIPAWLAYSIFSSGTQIPQLVPTPTGSENDFSKAFAIFSNVCLIFFIFAIIMWAGSIISSRGVTLIKEVKLKVA

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