Sample 3300021854

3300021854: Metatranscriptome of extremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - OCTB_RNA (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300021854 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0116196 \| Gp0213323 \| Ga0187839
Sample Name	Metatranscriptome of extremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - OCTB_RNA (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	79760936
Sequencing Scaffolds	39
Novel Protein Genes	42
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	4
Not Available	30
All Organisms → cellular organisms → Eukaryota → Opisthokonta	2
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae	1
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Extremophilic Microbial Mat Communities From Usa And Mexico
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Surface (non-saline)

Location Information
Location	USA: Wyoming
Coordinates	Lat. (^o)	44.534	Long. (^o)	-110.7978	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005746	Metatranscriptome	391	N
F013155	Metagenome / Metatranscriptome	274	Y
F014979	Metatranscriptome	258	N
F018668	Metagenome / Metatranscriptome	233	Y
F038745	Metagenome / Metatranscriptome	165	Y
F040487	Metatranscriptome	161	N
F043237	Metagenome / Metatranscriptome	156	Y
F051572	Metagenome / Metatranscriptome	144	N
F054065	Metatranscriptome	140	N
F062378	Metagenome / Metatranscriptome	130	Y
F077497	Metagenome / Metatranscriptome	117	Y
F087443	Metagenome / Metatranscriptome	110	Y
F090626	Metagenome / Metatranscriptome	108	Y
F100050	Metagenome / Metatranscriptome	103	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0187839_1006481	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1112	Open in IMG/M
Ga0187839_1014793	Not Available	535	Open in IMG/M
Ga0187839_1024660	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	526	Open in IMG/M
Ga0187839_1046174	Not Available	661	Open in IMG/M
Ga0187839_1047880	Not Available	595	Open in IMG/M
Ga0187839_1049186	Not Available	517	Open in IMG/M
Ga0187839_1061708	All Organisms → cellular organisms → Eukaryota → Opisthokonta	547	Open in IMG/M
Ga0187839_1064103	Not Available	537	Open in IMG/M
Ga0187839_1067470	All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	757	Open in IMG/M
Ga0187839_1068325	Not Available	575	Open in IMG/M
Ga0187839_1071034	Not Available	603	Open in IMG/M
Ga0187839_1071587	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae	1791	Open in IMG/M
Ga0187839_1076422	Not Available	580	Open in IMG/M
Ga0187839_1082738	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1911	Open in IMG/M
Ga0187839_1087925	Not Available	530	Open in IMG/M
Ga0187839_1088660	Not Available	558	Open in IMG/M
Ga0187839_1089777	Not Available	644	Open in IMG/M
Ga0187839_1094461	Not Available	649	Open in IMG/M
Ga0187839_1101063	All Organisms → cellular organisms → Eukaryota → Opisthokonta	2253	Open in IMG/M
Ga0187839_1101390	Not Available	1036	Open in IMG/M
Ga0187839_1102776	Not Available	1209	Open in IMG/M
Ga0187839_1109769	Not Available	524	Open in IMG/M
Ga0187839_1109831	Not Available	719	Open in IMG/M
Ga0187839_1110489	Not Available	632	Open in IMG/M
Ga0187839_1116104	Not Available	538	Open in IMG/M
Ga0187839_1125238	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	912	Open in IMG/M
Ga0187839_1128528	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	1629	Open in IMG/M
Ga0187839_1137834	Not Available	504	Open in IMG/M
Ga0187839_1156011	Not Available	605	Open in IMG/M
Ga0187839_1162002	Not Available	550	Open in IMG/M
Ga0187839_1163681	Not Available	566	Open in IMG/M
Ga0187839_1168955	Not Available	569	Open in IMG/M
Ga0187839_1178269	Not Available	586	Open in IMG/M
Ga0187839_1204971	Not Available	508	Open in IMG/M
Ga0187839_1205983	Not Available	644	Open in IMG/M
Ga0187839_1211158	Not Available	634	Open in IMG/M
Ga0187839_1211512	Not Available	719	Open in IMG/M
Ga0187839_1213030	Not Available	554	Open in IMG/M
Ga0187839_1219402	Not Available	511	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0187839_1006481	Ga0187839_10064812	F013155	YQVTMVVIALANLAVTIWLLRLLIPVWRTLKKVMSSVDQFDFDKLANQFLNGEKPLAESIHIKTTENKEENYKEIVVVRSFKRPLDPKEIQESFTRQMAEKLQ
Ga0187839_1014793	Ga0187839_10147931	F005746	RVATRAPFEKFLQLVQAWRTALTAYGGLKTVPSRKDVEKFEQAVGTARILTVPLPSGRIIEVGTEDWRARFPFRAYFGVSPRDVLPEVRIQRQIFPNNPLSLKLTDGKGNYTPVGEELFRDAWWVMQDHILHPPGTVPAYWPMLPVLPDFRPAPGSVRSHGAVYCRVQPDGKARFYYA
Ga0187839_1024660	Ga0187839_10246602	F013155	MELYQIIVTAIAAANLAVTIWLLRILIPVWRTLQKIVFALDDFDLDKLAKEFVGNQTPVAESVTLKATQNEGEGYREISIIRTYKKPLDPREVQENFTRQMAEKLQ
Ga0187839_1046174	Ga0187839_10461741	F005746	SGFDWAKERVSALVQWLLKLRAGENPSRPPWWSDRYLRYAERVATKAPFEKFLQLVQAWRTALTAYGGLKTVPSRKDVEKFERAVGTARVLTVPLPSGRIIEVDTEDWRARFPFRAYFGVSPRDVLPEVRIQRQILPNNPLSLKLTDGRGNYTSVGEELFRDAWWVMQDHILHPPGTVPAYWPMLPVLPDFRPAPGSVRAHGAVYCRVQPDGKARFYYAP
Ga0187839_1047880	Ga0187839_10478801	F014979	DPRLAEAYREFSTQVLGVEISEPKSLAGRLGEFVGRLIAPDGIGFKLKAPQRLDYRTLAAYLSLVGTRALRIWRQSLLRDLIALIPRDNYQGSNPGGIPKEYVDRFLVEYFALEREVEPPRLYAVDPRHTVEARIGPLYSMSVVLPREPTATEWAPLGAADCGPAGEPVRSHYGEPRPASDRSPGWLRRVLEAARRS
Ga0187839_1049186	Ga0187839_10491861	F014979	RTLAAYLSLIGSRALRVWRQSLLRDLIALIPRENYPGSNPGGLPKEYVDKFLVEYFALEREVEPPRIYAVDPEHTVKARIGPLYSMSVVLPRDPTATEWEPRGSAMCGPGGAPVDSPYRESKPASDRSPGWLRRVREAAQRSGIDLIWRLIRLGRWSRRGGGQGPEAT
Ga0187839_1061708	Ga0187839_10617081	F018668	KSLLIASVAAVAFAAPQGASDKNTEVKASAQDNSPKCGNGQKIACCNSGEDLIGLNCLSIPILAIPIQQACGSNVAACCQTGDAEGNLINLEANCLAIPL
Ga0187839_1064103	Ga0187839_10641031	F005746	GFDWTRERVSALIQWLLKLRAGENPSRPSWWSDRYLRYAERVATRAPFEKFLQLVQAWRTALTAYGGLKTVPSKKDVEKFERAVGTARVLTVPLPSGRVIEVDTEDWRARFPFRAYFGVSPRDVLPEVRIQRQILPNNPLSLKLTDARGGYTDVGKELFRDAWWVMQDHVIHPPGAVP
Ga0187839_1067470	Ga0187839_10674701	F087443	KNYWAKFSIEDNIEYIDKELTKIAVDLSLDPSELRAWVFKAFIYDPEVRAKVIEYIKKNG
Ga0187839_1067470	Ga0187839_10674702	F077497	MDKEQINKLEEILEKHLFGKANNSEYELTKMQVIVLYLIYQKLKSIDEKLNAIDQSLFEIANPGLFEK
Ga0187839_1068325	Ga0187839_10683251	F014979	IAPDGIGFKLKAPRSLDYRTLAAYLSLIGSRALRVWRQSLLRDFIALIPRENYLGSNPGGLPKEYVDKFLVEYFALEREVEPPRVYVVDPEHTVKARIGPLYSMSVVLPRDPTATEWEPRGSAECGPGGAPVDSRYRESKPASDRSPGWLRRVREAAYRSGVDLVWRLIRLGRWSRRGGGQGPEAT
Ga0187839_1071034	Ga0187839_10710341	F005746	SALVQWLLKLRAGENPSRPPWWSDRYLRYAERVTTRAPFEKFLQLVQAWRAALTAYGGLKTVPSKKDVEKFERAVGTARVLTVPLPSGGVLEVDTEDWRARFPFRAYFGVSPRDVLPEVRIQRQILPNNPLSLRLADGKGNYTPVGIELFRDAWWVMQDHILHPPGTVPAYWPMLPVLPDFRPDPGSVRAHGAVYCRVQPD
Ga0187839_1071587	Ga0187839_10715872	F038745	MNRAVAAVCGELMQASLALTAYYPLCLGGRPCAYAEAMERLIRRAASARGAEELLAAINGRVRLEELGMPPPVLEALTEVLGPEPRWLDALAASFFRLYLGLHRRRRVDGRDLAFALCLWAQKKRLEDPWNPLWRAAELEPDRLYTEEEARRALKIDERHFKRLWMRAQTFHSNEKAYGFQLILAALSLMAASPRSV
Ga0187839_1071587	Ga0187839_10715873	F051572	MNSGRTHAGPFAEVRTLADVVLDSCKKSAHFLRAHIDLCVLAALVKTAPAGAMVKLRPAQAWRLLEELAAAGQDREKTRNALRKRAGEVLAQLGREMGGSVPAEALLAKLSELFLKELEA
Ga0187839_1076422	Ga0187839_10764221	F090626	VKLFANKTHLENHVDYDATALAFLLDVSDFTNTNALLSHYAIVDKNMYRPILIEWNLKTIYGRLMILKQLHGPNNTKMLLAKFENSIEENSNPNLVKYLAGQYAKAITIERGLYQVYNFLIQRIYTLKLSGIRKSLEEVKRLDAVYR
Ga0187839_1082738	Ga0187839_10827383	F051572	VWTFADVVLEGGCKKSVQFLNTRLELCVLAALIKTAPAGSMVRLRPEIVRRLVEELAAAAGQDRERIRNALLKKAGETLAQLRRELGDKTPAEALLAKLAELFLKELEA
Ga0187839_1087925	Ga0187839_10879251	F005746	DWTKERISALVQWLLKLRAGENPSRPPWWSERYLRYAERVATKAPFEKFLQLVQAWRTALTAYGGLKTVPSRKDVEKFERAVGTARILAVPLPSGRTIEVDTEDWRSRFPFRAYFGVSPRDILPEVRIQRQILPNNPLSLKLTDGKGNYTPVGEELFRDAWWVMQDHSLHSPRRRA
Ga0187839_1088660	Ga0187839_10886601	F014979	ISEPKSLAGRLGEFVGRLIAPDGIGFKLKAPLSLDYRTLAAYLSLIGSRALRVWRQSLLRDLIALIPRENYPGSNPGGLPKEYADKFLVEYFALEREVEPPRVYAVDPDHTVKARIGPLYSMSVVLPRDPTATEWEPLGSAKSGPGGAPVDSPYRESKPASDRSPGWLRRVREAARRSGVDLIWH
Ga0187839_1089777	Ga0187839_10897771	F005746	KERVSALVQWLLKLRAGENPDRPAWWSDRYLRYAERVATRAPFEKFLQLVQAWRTALTAYGGLKTVPSKKDVEKFERAVGTARVLTVPLPSGRVVEVDTEDWRSRFPFRAYFGVSPRDVLPEVRIQRQILPNNPLSLKLTDGRGNYTPIGEELFRDAWWVMQDHILHPPGTVPAYWPMLPVLPDFRPAPGSVRAHGAVYCRVQPDGKARFYYAP
Ga0187839_1094461	Ga0187839_10944611	F054065	MPSTAYTRRLMAAFPLVSAAYREQIVVAVDRWVRASGFDWAKERVSSLVQWLLKLRAGENPSRPPWWSDRYLRYAERVATRAPFEKFLQLVQAWRTALTAYGGLKTVPSRKDVEKFERAVGTARVLTVPLPSGRVIEVDTEDWRARFPFRAYFGVSPRDVLPEVRIQRQIAPNNPLSLKLTD
Ga0187839_1101063	Ga0187839_11010631	F062378	MAASKPISXLFLKKTSLISLNNNFGTLTLVLGCFPLDIQPYRNMSDSLI
Ga0187839_1101390	Ga0187839_11013902	F051572	VQTFADVVLDSCKKSAHFLRAHIDLCVLAALIKTVPIGVVKLRPAQAWRLLEELAAAGQDREKTRNALRKRAGEVLAQLGREMGSSVPAEALLARLSELFLKELEA
Ga0187839_1102776	Ga0187839_11027762	F100050	MDAVVRYVVATMLAVAGGYVGYHFVPSVPFGAVGNALFVGALFGLFAGLFGFTGFFGNVVNVFLLAFPLWHVLPGEWFVVWVGGNAGYAVGNTFGQLARLSAVNKIGVKAL
Ga0187839_1109769	Ga0187839_11097691	F054065	AAMPSTAYTRRLMAAFPLVSAAYRHLITEAVDRWVRASGFDWTKERISALVQWLLKLRAGENPSRPPWWSDRYLCYAERVATRAPFDKFLQLVQAWRTALTAYGGLKTVPSKKDVEKFERAVGTARVLTVPLPSGRIVEVDTEDWRARFPFRAYFGVSPRDVLPEVRIQRQILP
Ga0187839_1109831	Ga0187839_11098311	F043237	MDLERTSRYIAQLSRHGYKYAILGELSNYNRELVKRIDLEGFVFYLCRLPSKREVIAYCLKKTDKPFKVYCLASKPLEIPHMPLKLHYDEKIQRLRLLAQKSFINDCLNAIERASSLTYPSPKLYIAAVNKALRQLYSVLAYTYNDRERVRAIRKKVKHWVVETLKKQYGLKPKDAMTDYHRYVLKFSDVLRKKRQKAHKR
Ga0187839_1110489	Ga0187839_11104891	F014979	VGDDLVIADPRLAEAYREFSTSVLGVEISEPKSLAGRLGEFVGRLIAPDGIGFKLKAPMSLDYRTLAAYLSLIGSRALRIWRQSLLRDLIALIPRENYPGSNPGGLPRGYADKFLVEYFALEREVEPPRVYAVDPEHTVRARIGPLYSMSVVLPRDPTATEWEPRGSARCGPGGAPVDSPYRESRLASDRLGRLASSRCLCPPGAPSRLT
Ga0187839_1116104	Ga0187839_11161041	F054065	TAYTRRLMAAFPLVSMAYRNLVVEAVDRWVRASGFDWTKERVSALVQWLLKLRAGENPSRPPWWSDRYLHYAERIATRAPFEKFLQLVQAWRTALTAYGGLKTVPSRKDVEKFERAVGTARVLTVPLPSGRVVEVDTEDWRARFPFRAYFGVSPRDVLPEVRIQRQILPNNPLSLKLTD
Ga0187839_1125238	Ga0187839_11252381	F013155	IALANLAVTIWLLRLLIPIWQTLRKVVFALDNFDFDEISKRFLSNEKPLAEAVDIKVSEKKEEGYREISIIRTYKKPLNPREIQANFVRQMAEKLQ
Ga0187839_1128528	Ga0187839_11285281	F043237	MELERTARYIAQLSSRGYKYAVVGKLARYDKKIVKKLEYEGFVFYLCRFQTKKEVVEYCLERAEGTFRVYCLASKPLEFPNAPLKLHYDEKTKRLRLLAQRSFINECLKVIERASSLKYPNHKLYTAKVNEALRNLYSILAYTYNDRERLRAIKRKVKHLFVEALKKNYGIEPKKAMEDYRRFVVKFSDVLKKKQRANSSTS
Ga0187839_1137834	Ga0187839_11378341	F014979	LSLIGSRALRVWRQSLLRDLIALIPRENYPGSNPGGIPKEYVDRFLVEYFALEREVEPPRVYAVDPEHTVRARIGPLYSMSVVLPRDPTATEWEPRGSAKCGPGGAPVDSQYRESKPASDRSPGWLRRVREAARRSGIDLIWRLIRSGGWSRRGGGQGPEAT
Ga0187839_1156011	Ga0187839_11560111	F005746	AFPLVSAAYRNLIMEATDRWVRASGFDWTKERISALVQWLLKLRAGENPSRPPWWSDRYLRYAERVATRAPFEKFLHLIQAWRTALTAYGGLKTVPSRKDVEKFERAVGTARVLTVPLPSGRVVEVDTEDWRARFPFRAYFGVSPRDVLPEVRIQRQILPNNPLSLKLTAGKGDYTPVGEELFRDAWWVMQDHILHPPGTV
Ga0187839_1162002	Ga0187839_11620021	F005746	ASGFDWTKERISALVQWLLKLRAGENPSRPPWWSDRYLQYAERVATRAPFEKFLQLVQSWRTALTAYGGLKSVPSKKDVEKFERAVGSARVLTVPLPSGRVVEVDTEDWRARFPFRAYFGVSPRDVLPEVRIQRQIPPNNPLSLKLTDGKGNYTPVGEELFRDAWWVMQDHILHPPGTVPAFW
Ga0187839_1163681	Ga0187839_11636811	F013155	QVITVVIALANLVVTIWLLRLLIPVWRTLKKVMNAVDDYDFDKLAKQFLGNETPLSETVQVKIQENKEEGYKELTVIKAYKKPLDPKEVRENIVRQMAQEMQ
Ga0187839_1168955	Ga0187839_11689551	F054065	MPSTAYTRRLMAAFPLVSAAYRILITEAVDRWVRASGFDWTKERISALVQWLLKLRAGENPSRPPWWSDRYLRYAERVATRAPFEKFLQLVQAWRTALTAYGGLKTAPSRKDVEKFERAVGTARVLTVPLPSGRVCEVDTEDWRARFPFRAYFGVSPRDVLPEVRIQRQILPNNPLSLKLTD
Ga0187839_1178269	Ga0187839_11782691	F005746	RISALVQWLLKLRAGENPSRPPWWSDRYLCYAERVATRAPFDKFLQLVQAWRTALTAYGGLKTVPSKKDVEKFERAVGSARILTVPLPSGRVVEVDTEDWRARFPFRAYFGVSPRDVLPEVRIQRQILPNNPLSLKLTDGKGNYTPVGEELFRDAWWVMQDHILHPPGTVPAYWPMLPVLPDFRPAPGSVRAHG
Ga0187839_1199832	Ga0187839_11998321	F043237	IDLEGFVFYLCRLPSKREVIAYCLKKTDKPFRVYCLASKPLEIPHMPLKLHYDEKTRRLRLLAQKSFINDCLNAIEKASEVKYPSPKLYLAHINRVLHQLYAILAHTYNDKERLRAIKRKVKHWVVEALKNQYGLKPKDAMIDYSRYVLKFSDVLKKKRKAPKA
Ga0187839_1204971	Ga0187839_12049711	F040487	GALGEFVGRIISAEGVAVKFKAPLLALRGDLLALRSLLDLIGPRALRAWRRTPLRDIVALIPGKTYPGCNPGGFPKELVDKFLVEYFSREREVDPPVRWAVDPENVVRARIVGLYSFSVGYIPPPGTADREPRGSARLGIGGAPSKGPSDGSYAWWRGRPPRSPAWLR
Ga0187839_1205983	Ga0187839_12059831	F054065	MPSTAYTRRLMAAFPLVSAAYRKLITEAVDRWVRASGFDWTKERISALVQWLLKLRAGENPSRPPWWSDRYLCYAERVATRAPFEKFLHLVQAWRTALTAYGGLKTVPSKKDVEKFERAVGTARILTVPLPSGRIIEVDTEDWRARFPFRAYFGVTPRDVLPEVRIQRQILPNNP
Ga0187839_1211158	Ga0187839_12111581	F014979	LGVEISEPKSLAGRLGEFVGRLIASDGIGFKLKAPQSLDYRTLAAYLSLIGSRALRVWRQSLLRDLIALIPREGYLGTNPGGIPKEYVDKFLVEYFALDREVEPPRVYAVDPEHAVRARIGPLYSISVILPRDPTATEWEPRGSAKCGPGGAPIDSPYRESRPASDRSPGWLRRVREAAHRSGIDLIWHLVRSGRWSRRGGGQGPEAT
Ga0187839_1211512	Ga0187839_12115122	F100050	VRYVVATLLAVVGGWIGYYMFPHEPFGVVGNGMFAGALLGVFVGLVGLTGFFGNVVNAFLLSFPLWFVLPGEWFVIWIMGNVGYAIGNMFGQLARLSAKGKIEAKAL
Ga0187839_1213030	Ga0187839_12130301	F005746	VQWLLKLRAGENPSRPPWWSERYLRYAERVATKAPFEKFLQLVQAWRTALTAYGGLKTVPSRKDVEKFERAVGTARVLTVPLPSGRVVEVDTEDWRARFPFRAYFGVSPRDVLPEVRIQRQILPNNPLSLKLTDGKGNYTPVGEELFRDAWWVMQDHILHPPGTVPAYWPVLPVLPDFRPAPGS
Ga0187839_1219402	Ga0187839_12194021	F005746	PFEKFLQLVQAWRAAFTAYGGLKTAPSKKDVEKFERAVGTARVLTVPLPSGRVIEVDTEDWRARFPFRAYFGVSPREVLPEVRIQRQIHPNNPLSLKLTDGKGNYTPVGEELFRDAWWVMQDHILHPPGTVPAYWPMLPVLPDFRPAPGSVRAHGAVHCPVQPDGKARF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300021854: Metatranscriptome of extremophilic microbial mat communities from Yellowstone National Park, Wyoming, USA - OCTB_RNA (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences