Sample 3300022170

Basic Information
IMG/M Taxon OID	3300022170 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0129088 \| Gp0215291 \| Ga0190366
Sample Name	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-9-10_MG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300022170 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0129088 | Gp0215291 | Ga0190366

Sample Name

Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-9-10_MG

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	116537782
Sequencing Scaffolds	25
Novel Protein Genes	33
Associated Families	25

Dataset Contents

Total Genome Size

116537782

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	17
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → unclassified Methanomicrobia → Methanomicrobia archaeon	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon	2
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	1
Not Available	3

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Archaea

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → unclassified Methanomicrobia → Methanomicrobia archaeon

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon

Not Available

Ecosystem Assignment (GOLD)
Name	Microbial Communities From Sediments And Microbial Mats In Various Locations
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Ecosystem Assignment (GOLD)

Name

Microbial Communities From Sediments And Microbial Mats In Various Locations

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0114	Long. (^o)	-110.5956	Alt. (m)	N/A	Depth (m)	2011
Location on Map

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Location Information

Location

Mexico: Guaymas Basin

Coordinates

Lat. (^o)

27.0114

Long. (^o)

-110.5956

Alt. (m)

N/A

Depth (m)

2011

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F011723	Metagenome	287	Y
F016235	Metagenome	248	Y
F017081	Metagenome	242	Y
F019935	Metagenome	226	Y
F023017	Metagenome	211	Y
F024453	Metagenome	205	Y
F026175	Metagenome	198	N
F033662	Metagenome	176	Y
F038025	Metagenome	166	Y
F046123	Metagenome	151	Y
F050065	Metagenome	145	Y
F055333	Metagenome	138	Y
F056226	Metagenome	137	N
F061431	Metagenome	131	N
F084955	Metagenome	111	Y
F089858	Metagenome	108	Y
F091133	Metagenome	107	Y
F091320	Metagenome	107	Y
F093028	Metagenome	106	N
F096384	Metagenome	104	Y
F096385	Metagenome	104	Y
F096386	Metagenome	104	N
F100147	Metagenome	102	N
F100148	Metagenome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0190366_1000002	All Organisms → cellular organisms → Archaea	74831	Open in IMG/M
Ga0190366_1000288	All Organisms → cellular organisms → Archaea	11777	Open in IMG/M
Ga0190366_1000470	All Organisms → cellular organisms → Archaea	9628	Open in IMG/M
Ga0190366_1000484	All Organisms → cellular organisms → Archaea	9497	Open in IMG/M
Ga0190366_1000520	All Organisms → cellular organisms → Archaea	9227	Open in IMG/M
Ga0190366_1000985	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → unclassified Methanomicrobia → Methanomicrobia archaeon	6829	Open in IMG/M
Ga0190366_1002237	All Organisms → Viruses → Predicted Viral	4246	Open in IMG/M
Ga0190366_1003367	All Organisms → cellular organisms → Archaea	3235	Open in IMG/M
Ga0190366_1003935	All Organisms → cellular organisms → Archaea	2911	Open in IMG/M
Ga0190366_1008811	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon	1641	Open in IMG/M
Ga0190366_1013743	All Organisms → cellular organisms → Archaea	1189	Open in IMG/M
Ga0190366_1019626	All Organisms → cellular organisms → Archaea	932	Open in IMG/M
Ga0190366_1021369	All Organisms → cellular organisms → Archaea	880	Open in IMG/M
Ga0190366_1022655	All Organisms → cellular organisms → Archaea	849	Open in IMG/M
Ga0190366_1022692	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	848	Open in IMG/M
Ga0190366_1027779	Not Available	745	Open in IMG/M
Ga0190366_1028465	All Organisms → cellular organisms → Archaea	733	Open in IMG/M
Ga0190366_1035839	All Organisms → cellular organisms → Archaea	637	Open in IMG/M
Ga0190366_1036586	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → unclassified Methanosarcinales → Methanosarcinales archaeon	629	Open in IMG/M
Ga0190366_1036640	All Organisms → cellular organisms → Archaea	628	Open in IMG/M
Ga0190366_1041949	All Organisms → cellular organisms → Archaea	579	Open in IMG/M
Ga0190366_1042300	Not Available	576	Open in IMG/M
Ga0190366_1050179	All Organisms → cellular organisms → Archaea	522	Open in IMG/M
Ga0190366_1051221	Not Available	516	Open in IMG/M
Ga0190366_1052566	All Organisms → cellular organisms → Archaea	508	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0190366_1000002	Ga0190366_100000215	F084955	METLYLTANALDKLTVLCPQTLKNLDEDAAFLAEEIISKYNKEKVKSAEKLIFHAITTVSKYLLTGRAEDNELDALLIYFENLFIDTGENPIEALIGVFTYYLLSKPHFDSYRHLISSYVFDEIDLGEAA
Ga0190366_1000002	Ga0190366_100000223	F026175	MALQSIKILNTGKENITKLLTGLGGYAYAAIGVGNDATAAAETDEHLLGSETNFKDGNQSYFQNANNSYIAQWNSTWVYNDLPSNQISEAAVAQNATNGTVNCLLRCTFDTIYLDADSSFSLILQVSPTQA
Ga0190366_1000002	Ga0190366_100000232	F038025	MSKLKFTGLIGDAEILRRSFWWLYQQGWISKESVSEEDYRDLGLEFPNGYERFDREEIREERYVRTRLGKRISLEKLKDLI
Ga0190366_1000002	Ga0190366_100000246	F093028	MNLEEYKKWKSPKELELPSGLKIKVRDLSPWDLLVAASKQKEYKPNDPQLIEHLMKKFIVWPEIGKDWQIDDIRPDDFVFLQTKLFESFSLERFDNAIKEVESIKEEHKDFSE
Ga0190366_1000002	Ga0190366_100000247	F096386	MSKEISVRPSDLLDPYHEEDAITRFAIDLVALVSDIEREPEIERPDINPEEDSLRKRDLEFKKKYNITLEQAKKIVFGNSNGSCRQQ
Ga0190366_1000002	Ga0190366_10000028	F100147	MPKRSIFRGFIFAELQSFRKSNLDIPVMVLQANVPIWDSTAYDRGFQIPADVLRKSIPKDCVPLFLFHDHHERLGHLCEFKYNPYKKALFAKLKILPQKKEKVLRLIKSEGINGISLELETLEERGRYLNKVLRMKITGAALVDRPACRKCRVKLFK
Ga0190366_1000288	Ga0190366_10002889	F096385	MRLLVVGTEEDKTVIMDGIVPCVARIRDGEVVEMQRRADAGALIEKWLEAAKRNPIAKKQILKFVEKIERRRRPRRDILSELHEKGRIILSGVV
Ga0190366_1000470	Ga0190366_10004702	F056226	MRAYDILLFLVCLEASIGFVASLDLFSTTYVDPSAVQLTDWNVQEIQNQSSEPSLLDTAIDGLVKAIPQFLNMLLAIAIVYIPLTQTLGVPTEVALLFQGAVYLIYVWAIIQFLSGRSVKYME
Ga0190366_1000470	Ga0190366_10004703	F017081	MEERGRKWWWKGICILGTLILLVATAQAIDITEITATETQIKITIANATSSGYIFVSPSNKSFPYAYSHQGNGTYTITATFLKVNTTYYVKVCDNENCSNVMSVNVSKEEKLVGQNFTAPFNNLMQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGMISGVAMIGLLPPSAQHIAYILLVISIAGSLYTIIKARR
Ga0190366_1000484	Ga0190366_100048412	F016235	MGEGENLSPPLFSHTKWRHREGYQKCVRKVGLSRNADFYGKGFPLCAVIKFKFPVIRYAPRTCEIAKLLATLRVLYGDDYMRELNALAELEYLKMVRNREWEHLLREVED
Ga0190366_1000484	Ga0190366_10004842	F011723	MVIYNKGLNRDNSTDEGKEIFSLTSKEEEKYKVRRIIITDVNTNPLLMEIWVERDRIGEAIPLETASDIAPERVIDVDVEIPVGYTFSVKIKPQTSGSQGSVRGWVEYEIIE
Ga0190366_1000484	Ga0190366_10004847	F091133	MGLLDVWDTFTDFVTDWWDAFKNKIGDIKNELWSWVDGIAKYWVERANEFWDILNHTWSEVEDLMEQAKSYADDIVTDAVLKVDKWVSEFGETVAELWNKIEPYFTSMITPIENAIDTIQNIKLPSLEDITNSLKSTVDDILNWDIPILNQSISDLWTEANEIWNEIWNNIWTSLNNAWDDINNLWKTINEIPADLWNAIIEGWDGLCDFLLSQGEKFVEKILDIDLPIDDVIEELEKRIKGGGK
Ga0190366_1000520	Ga0190366_100052011	F050065	VSDVEQVKFVIAYLKGLLRDAKRRGDEEVARYIGEIIGIYEARLQSQNNNN
Ga0190366_1000985	Ga0190366_10009854	F023017	MRLKKEQREEMKQKIVEFLKNVNGHIASIPMLAKVIKASPPTTKSIVGELEVEKKVRIVRLGNDYIVKLEKGGE
Ga0190366_1002237	Ga0190366_10022378	F050065	VSDDVEKILLAITYLEGLLRDAKRKGDEKLVKYVGDIIRVYKERLQSQNSNN
Ga0190366_1003367	Ga0190366_10033677	F046123	MPCPYKEGSDMCWLCWNWIESAEYCLYDEKDHEREFVLIDEFKDIDPQTYKERLEWIKGLGLMSLYRAVKAGMVKEQRTLSDFGVEEAMAHE
Ga0190366_1003935	Ga0190366_10039352	F100148	MLSPMEKLEALSRGYSLEELIEYEHLRGVALIKDLETGVEKIYSHSFAKFLEDRNLAEIIRVADTVQELMRSRHETARRDTRNRVDKMTIVIERLEKLLESSRSERRRLLDEARIVKRS
Ga0190366_1008811	Ga0190366_10088112	F061431	MKWILVGIVCACAVAALAIASFFCGSKTLEVELELKWTLSEGKYQQIPVKVGDILYGDDNVEVRIEELGEEKREGEIPNITITRTARGVVLRGAENVREGMSLRLLREGFVAIPEACAPLVRVERLIWK
Ga0190366_1013743	Ga0190366_10137433	F089858	VEWIEYLVRLRFHINGFYEDKLEKEYVEKEIRKKLSIPELEERGWMEIMVSEKGADGLLNIPVRGAELWIEELKDGRLVINLGDPDDPKHTCVEVEVEHKDLTREEMRVRDVKYVILGDIPDMGK
Ga0190366_1019626	Ga0190366_10196261	F033662	LIMSFSKHYTRVEVIASSAHHGDPSIVVVVKNLGSEVLSITDLYLNKVPAASLIGDSIQSINPDITESPIQIKPGERREIEVALIPSKWSSGEMVEVMIVTSTGNKYYTMVVLS
Ga0190366_1021369	Ga0190366_10213691	F055333	MGDDLQAIKAVKVCLAGRSTGMGAYTEWALYSTRQRKRLKPHRTESSRSGNHWWDYYYLLPGKYLAAVKDISNSGKHRCRYCLIRVFTLEEYREKVKNDPTAMSNFEYFYRHYGYEIIDLPS
Ga0190366_1022655	Ga0190366_10226552	F033662	MGGVGKLVSTVIILAISLMLAIAASYLMMSFSKHYTRVEVIESSAHHGDPSIVVVVKNLGGKVLSITDLYLNKVPVASLIGDSIQSINPDITKSPLQIKPGERREIEVALIPSKWSSGEIVEVIIVTSTGNKYYTMVVLS
Ga0190366_1022692	Ga0190366_10226921	F024453	VKVEIPDRDAVVMYFAILQNLSQRPDLTDLEREALDFASSLLYQSIYSEEISEVGEEVKGVREEGREGDMESVRSVHELAQVRRANAKQQRTGR
Ga0190366_1027779	Ga0190366_10277792	F011723	MVIYNKGLSRDNSTDEGKKIFSLISKPEEKYKVRRIVITDVNTNPLLMEVWVERDRIGDAIPLEVASDIAPERVIDLDTEIPEGFEFSIIIKPQNSGSQGSVRGWVEYEIVG
Ga0190366_1028465	Ga0190366_10284651	F007460	MSDGEGIGMGTAIFVVMLNIVFAIIFFFLIGSVMCGILPPLTNVVGVDETTPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGEEEEW
Ga0190366_1035839	Ga0190366_10358391	F100148	MLSPMERLEALSRGYSLEELIEYEQLRGVALIKDLETGVEKIYSHSFAKFLEDRNLAEIISVANTVQELMRNRREMARRVTQDRVDKMTTVIERLEKLLESNRSEKRRLLDEARIIKRT
Ga0190366_1036586	Ga0190366_10365862	F061431	MKWILVGIACACVVAALAIASFFCGSKTLEVELELKWTLSEGKYQQIPVKVGDILYGDGDVEVKIEELGEEKREGEFPNITITRTARGVVLRGAENVRKGMSLRISREGFVAIPEACAP
Ga0190366_1036640	Ga0190366_10366401	F096384	MGFPVEIGGRADESVPFVKKASLNAPFQWKLGLSKISMLSAS
Ga0190366_1041949	Ga0190366_10419491	F091320	KVIVFDPHGTLANRLEYHPLLEVNFTKGKVDVTKKLQKIYDEASKWSETNELRLLVVLDETRLLKAKNLAYCINELGKRGVGFILITQYSTSISPEVRNVGTYFIMGVMSETEIDRFREITLHPSSKLITRLPRACSFVFSPYWYPEPFFVKHRMLKM
Ga0190366_1042300	Ga0190366_10423001	F096384	MMVFKDFARMGFPLEIGGRAAESVPFVKRASLKAPFQWKLGLSKISMLSASERLYSRFFWRKKCSTQRFL
Ga0190366_1050179	Ga0190366_10501791	F096386	MSKTLSIRPSDFLDPYFEEDAITRFAIDLVVLVSDIEEHESEIPNIEAQTDSLRKRDLEFKKKYNITLEQAKKIVFGDTDGSGRR
Ga0190366_1051221	Ga0190366_10512211	F096384	MRVFKDFARMGFPLEIGGRADESVPFVKRASMNAPFQWKLGWSKISMLSAFERFYSRLFL
Ga0190366_1052566	Ga0190366_10525661	F019935	MPKVKEIPNRVVVHIGDLWKKYHRASPKVRKRWKFRIKDVGRTKHSELILCKPPNKDWQVYAWSFSKRQVKKGKRRLLVYDVKAFEILQKLKESGELRGWKLVFRG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300022170: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-9-10_MG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences